Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00056 ATGGCTTTCTCTGCTGCTTTTGCTACTCCTACCTTCTTTTATGTGGCTTCAGGGGAGACCAAAACAGCATCTCCGAAACGCTCTTTTAAACCCCCCAAAACCCTCTCTCCTTATCCGCCATCGACGACCACGAGTTCTAGCGCCGCACTTGCCCGGGCAAATTCCTCTCTGCCTCTCAAGAAGGTTTTGGTTCCAATTGGGTTTGGTACTGAAGAGATGGAAGCTGTCATTGTGATTGATGTTTTGCGCCGAGCGGGAGCTAATGTGACTGTGGCGTCTGTGGAACAAGAGCTTGAAGTTGAAGCTTCCGGGGGCATGAAATTGGTTGCAGATACTTCCATTACAAGCTGTTCTAATGAAATTTTTGATCTTGTGGCTTTGCCTGGAGGAATGCCTGGTTCTGTACGGTTGAGAGATTGTGAAATTTTGCGGAAAATCACAAGCAAACAAGCCGAGGAAAAGAGGCTTTATGGAGCTATTTGTGCAGCGCCAGCAGTTACACTTTTGCCGTGGGGTCTTGTGAAGAAAAAACAGACAACTTGCCACCCTGCATTCTTTGGTAAGCTGCCAACCTTCTGGGCTGTTAAATCAAACATCCAAGTTTCAGGGGAACTCACTACAAGCCGTGGTCCTGGAACTTCATTCGAATTTGCACTAGCTTTAGTTGAGCAACTTTTTGGAGAGTTGATTGCCAAAGAAGTTGGAGAACTTCTGCTTATACAGAATAAAGATGAATTTCCCAGGAAAGAAGAGTTCAACAAAGTTGACTGGTCTGTTAACCATAATCCTCGAGTCCTAATTCCAGTTGCAAACGGCTCTCACGAGATTGAACTTGTTACTATTGTTGATGTCTTAAGACGTGCGAGGGTAGATGTCGTGATTGCTTCTGTCGAAAGATCCCGACAGATTTTGGCATCACAGCGCACAAAAATCGTTGCTGATAAATTGATCAGTGAAGCTGCACAGTCATTATATGATTTAATTATACTTCCAGGTGGAGCCATGGCAGATGATCGACTGAACAAATCTAGGATATTGAAAAAGATGCTCAAACAACAATATTCTTCCAAGAGGATGTATGGAGGAGTCTGCTCTTCACAAACAGTCCTCCAAAAACAGGGTCTGCTGAAGGATAAGAAGGCCGTTGCTCATACATCAGCGGTAACTGAGCCAGCCGAGGAAGTTGTCAATGGTGCTAAAGTAATTATCGATGGCAATCTAATAACAAGCACGGGACTTGCTAATGCAACGTATTTTGCTCTGGCAATTGTTGGCAAACTTTTTGGTCATGCACGGGCAAGAAGTGTAGCTGAAGGTCTTGTTTTCGAATATCCCAGAAATGGGTGA 1347 44.54 MAFSAAFATPTFFYVASGETKTASPKRSFKPPKTLSPYPPSTTTSSSAALARANSSLPLKKVLVPIGFGTEEMEAVIVIDVLRRAGANVTVASVEQELEVEASGGMKLVADTSITSCSNEIFDLVALPGGMPGSVRLRDCEILRKITSKQAEEKRLYGAICAAPAVTLLPWGLVKKKQTTCHPAFFGKLPTFWAVKSNIQVSGELTTSRGPGTSFEFALALVEQLFGELIAKEVGELLLIQNKDEFPRKEEFNKVDWSVNHNPRVLIPVANGSHEIELVTIVDVLRRARVDVVIASVERSRQILASQRTKIVADKLISEAAQSLYDLIILPGGAMADDRLNKSRILKKMLKQQYSSKRMYGGVCSSQTVLQKQGLLKDKKAVAHTSAVTEPAEEVVNGAKVIIDGNLITSTGLANATYFALAIVGKLFGHARARSVAEGLVFEYPRNG 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 426039 430084 - Bpe005295.1 Bpe12g00056 112069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00056 448 PANTHER PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED 42 445 - -
Bpe12g00056 448 CDD GATase1_DJ-1 265 427 - -
Bpe12g00056 448 SUPERFAMILY Class I glutamine amidotransferase-like 264 447 IPR029062 -
Bpe12g00056 448 Pfam DJ-1/PfpI family 60 224 IPR002818 -
Bpe12g00056 448 Pfam DJ-1/PfpI family 264 424 IPR002818 -
Bpe12g00056 448 PANTHER PROTEIN DJ-1 HOMOLOG C 42 445 - -
Bpe12g00056 448 SUPERFAMILY Class I glutamine amidotransferase-like 60 241 IPR029062 -
Bpe12g00056 448 MobiDBLite consensus disorder prediction 22 46 - -
Bpe12g00056 448 Gene3D - 53 251 IPR029062 -
Bpe12g00056 448 Gene3D - 257 447 IPR029062 -
Bpe12g00056 448 CDD GATase1_DJ-1 62 225 - -
Bpe12g00056 448 TIGRFAM not_thiJ: DJ-1 family protein 264 438 IPR006287 -
Bpe12g00056 448 TIGRFAM not_thiJ: DJ-1 family protein 61 234 IPR006287 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00056 - - - cmo:103495244 601.668
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00256 Bpe-Chr9:1873376 Bpe12g00056 Bpe-Chr12:426039 3.95E-126 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g402 . . . . . Bpe12g00056 . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1088 . . . . . . . . Blo13g00575 Bda15g00034 . . . . . . . . Cma11g01744 . Car11g01096 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010954 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00056 Bpe_Chr12 FPKM 13.617786 15.023274 17.702694 18.049009 12.088696 11.115915 12.671188 10.474672 10.23039 11.676056