Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00058 AGTCTTTCCTACTTCCTCTCCCCTCCTTTTCGCTTCTGCACAATGCAATTCTCCTTCCCCAAACCACCGCACATCGACGGAGCTTCCTCCGGGAGACCTACCCGGATTTCTTCAGAGCAGGAACTCTCCGTCATCGTGACTGCGCTGACTCACGTCGTCTCCGGCACTGTCTCCTCCACTGAATTCGGAAACGATTTTCATTTCTTTCACTCCTCCCCGGATTTCGGAACTACCTCTCTGCCCAGCTCCGGTACTGACGCCATTTTTGCGTCCGATTTCGAAATGTGTCAGGTCTGTAAAATCGAAGGGTGTATAGGCTGCAACTACTTTGCCCCGCCATCGAAACAGGAAGAGAAAAAAGCTGGGAAGAGAAGGTTGAAGAAGAACTACAGAGGGGTGCGGCAGCGGCCGTGGGGGAGGTGGGCCGCCGAGATTAGAGACCCAAAGAGAGCGGCTCGGGTCTGGCTCGGCACTTTCAACACAGCTGAGGAGGCCGCTCGTGCCTACGATAAAGCCGCCATAGAATTCCGTGGGCCGCGAGCGAAGCTCAATTTCCCCTATCCGGATAGCTCATCGAACCAGAGTTTTTCGATTCCGGCGCCAGAGCCTGTGTTCAACCACTTCTCACTGGACCAGGAAAGTGGAATGATCTGGGAGAATATCGATGAGGAATGGATGATGATGATGGATTTGGCTACCCATTCATCGGACTCTGCTAAATCTGCAAACACTGTCTGA 738 53.25 SLSYFLSPPFRFCTMQFSFPKPPHIDGASSGRPTRISSEQELSVIVTALTHVVSGTVSSTEFGNDFHFFHSSPDFGTTSLPSSGTDAIFASDFEMCQVCKIEGCIGCNYFAPPSKQEEKKAGKRRLKKNYRGVRQRPWGRWAAEIRDPKRAARVWLGTFNTAEEAARAYDKAAIEFRGPRAKLNFPYPDSSSNQSFSIPAPEPVFNHFSLDQESGMIWENIDEEWMMMMDLATHSSDSAKSANTV 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 436846 437583 + Bpe005297.1 Bpe12g00058 112071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00058 245 Gene3D AP2/ERF domain 128 187 IPR036955 GO:0003700|GO:0006355
Bpe12g00058 245 ProSiteProfiles AP2/ERF domain profile. 129 186 IPR001471 GO:0003700|GO:0006355
Bpe12g00058 245 CDD AP2 128 187 IPR001471 GO:0003700|GO:0006355
Bpe12g00058 245 SMART rav1_2 129 192 IPR001471 GO:0003700|GO:0006355
Bpe12g00058 245 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 33 240 - -
Bpe12g00058 245 PRINTS Ethylene responsive element binding protein signature 130 141 IPR001471 GO:0003700|GO:0006355
Bpe12g00058 245 PRINTS Ethylene responsive element binding protein signature 152 168 IPR001471 GO:0003700|GO:0006355
Bpe12g00058 245 SUPERFAMILY DNA-binding domain 129 187 IPR016177 GO:0003677
Bpe12g00058 245 Pfam AP2 domain 129 178 IPR001471 GO:0003700|GO:0006355
Bpe12g00058 245 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 33 240 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00058 - - - fve:101295986 213.001
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe12g00058 Bpe15g00897 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00691 Bpe-Chr3:27026893 Bpe12g00058 Bpe-Chr12:436846 3.37E-29 dispersed
Bpe09g00045 Bpe-Chr9:302777 Bpe12g00058 Bpe-Chr12:436846 1.26E-29 dispersed
Bpe11g00070 Bpe-Chr11:475161 Bpe12g00058 Bpe-Chr12:436846 7.15E-21 dispersed
Bpe12g00058 Bpe-Chr12:436846 Bpe14g00816 Bpe-Chr14:6177253 6.33E-29 dispersed
Bpe13g00674 Bpe-Chr13:13473482 Bpe12g00058 Bpe-Chr12:436846 3.00E-26 dispersed
Bpe13g01056 Bpe-Chr13:16205097 Bpe12g00058 Bpe-Chr12:436846 2.56E-22 dispersed
Bpe14g00434 Bpe-Chr14:4000360 Bpe12g00058 Bpe-Chr12:436846 3.95E-32 dispersed
Bpe15g00389 Bpe-Chr15:15419249 Bpe12g00058 Bpe-Chr12:436846 3.16E-29 dispersed
Bpe15g01168 Bpe-Chr15:20564012 Bpe12g00058 Bpe-Chr12:436846 1.75E-24 transposed
Bpe12g00058 Bpe-Chr12:436846 Bpe15g00897 Bpe-Chr15:18866172 8.24E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g418 . . . . . Bpe12g00058 . . Cmo19g00624 Cmo11g01359 . . . . Sed04g1638 . . Bhi05g01124 Tan02g0906 Cmetu06g0968 . Hepe02g0583 . . Cla02g00597 Cam02g0626 Cec02g0626 Cco02g0641 Clacu02g0630 Cmu02g0626 Cre02g0950 Cone6ag1392 . . . . Csa07g00764 . . Blo04g00488 Blo13g00573 . Bda14g00518 Bpe15g00897 . Bma03g00518 Bma08g00799 . . . Cma11g01754 Cma19g00606 . Car19g00460 . . . . . . . . . . . . . . . . . . Chy01g00050 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000711 2 2 3 3 2 3 5 3 3 3 3 3 5 3 3 5 3 7 2 3 3 5 3 3 2 3 3 4 3 2 97
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22161 PF00847 AP2 8.70E-16 CL0081 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00058 Bpe_Chr12 FPKM 13.035013 12.97229 12.88087 13.632948 9.826033 10.268607 8.976914 22.776421 22.942131 19.447725