Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00060 ATGACTGAGTATTGGGTTAGCCAGGGTAACAAATGGTGCGACTTCTGCAAAATCTATATTTCAAACAATCCCTCCAGCATTAGAAATCATGAGCTTGGTCAACGCCACAAGGACAGTGTTTCCAAAAGGCTTGCTGATATGAGAAAAGAGAATGCTGCAAAGGAGAAGCAACAAAAGGAAGCAGCCCGTGCAGTCGAGCAAATTGAAGCTAAAGCAAATCGCAGCTATCAGAAAGATGTCGCAAAACTTAAGGAGACAAGAGAATCTCATGCTCCTCCGTCAGACGACCAAGATGGTCAAGAAAGATGGGAATTTGACAGTACCTCCGGCTATTATTACAACAAAAGCAACGGTTTCTATTACGATTCAAACTCAGGCTTCTACTATGCTGATAATATTGGAAAATGGGTGACACAGGAGGAGGCATATGCTACCCCCCAGTTTTCATCGAATTCGACGCATAAGAAACCGACTCTAATAATGCCATCATCAACAACTGCAAAATGGGTATCCCAAGACAAAGGCAGTGATAGAGATCAAAGTGGGCCTCCACCTGGGCCAGTTGTTTCGGGCTCCTTAAATCCGATGAGATCTGTCAAGGGGGCTCCCTCATCAGTTGCTGTGGGTAAGAGAAAGAGGCCAGATGAGAAGCCAAAGGTTATATCCAAAGAAGAAGCAGCTGCACTCAAAGCAAGGGAGGCTGCAAAGAAGAGAGTTGAGAATAGGGAGAAGCCACTGCTTGGCCTTTACAGATCACGGTGA 762 45.28 MTEYWVSQGNKWCDFCKIYISNNPSSIRNHELGQRHKDSVSKRLADMRKENAAKEKQQKEAARAVEQIEAKANRSYQKDVAKLKETRESHAPPSDDQDGQERWEFDSTSGYYYNKSNGFYYDSNSGFYYADNIGKWVTQEEAYATPQFSSNSTHKKPTLIMPSSTTAKWVSQDKGSDRDQSGPPPGPVVSGSLNPMRSVKGAPSSVAVGKRKRPDEKPKVISKEEAAALKAREAAKKRVENREKPLLGLYRSR 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 445585 447372 - Bpe024872 Bpe12g00060 112073

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00060 253 MobiDBLite consensus disorder prediction 146 253 - -
Bpe12g00060 253 Pfam U1 zinc finger 11 43 IPR013085 GO:0008270
Bpe12g00060 253 SMART ZnF_U1_5 8 43 IPR003604 GO:0003676|GO:0008270
Bpe12g00060 253 PANTHER WW DOMAIN BINDING PROTEIN 4 1 245 IPR040023 GO:0000398
Bpe12g00060 253 MobiDBLite consensus disorder prediction 209 253 - -
Bpe12g00060 253 ProSiteProfiles Zinc finger matrin-type profile. 11 42 IPR000690 GO:0003676|GO:0005634|GO:0008270
Bpe12g00060 253 MobiDBLite consensus disorder prediction 146 171 - -
Bpe12g00060 253 Pfam OCRE domain 100 149 IPR041591 -
Bpe12g00060 253 Coils Coil 37 74 - -
Bpe12g00060 253 SUPERFAMILY beta-beta-alpha zinc fingers 12 53 IPR036236 -
Bpe12g00060 253 MobiDBLite consensus disorder prediction 69 102 - -
Bpe12g00060 253 Gene3D Classic Zinc Finger 9 71 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00060 K13220 WBP4, FBP21; WW domain-binding protein 4 - qsu:112004220 372.474
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00060 Bpe-Chr12:445585 Bpe09g00699 Bpe-Chr9:15562375 3.77E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g451 . . . . . Bpe12g00060 . . Cmo19g00635 . . . . . Sed10g2044 . Cpe15g00499 Bhi05g01134 Tan02g0890 Cmetu01g0261 . Hepe02g0574 . . Cla02g00585 Cam02g0618 Cec02g0617 Cco02g0633 Clacu02g0615 Cmu02g0611 Cre02g0942 Cone12ag1107 Cone8ag1147 . . . Csa07g00774 . Cme01g00036 . Blo13g00570 Bda15g00031 . . . . Bma08g00796 . . . . Cma19g00616 . Car19g00469 . . . . . . . . . . . . . . . . Lsi11g01021 . Chy01g00042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008813 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00060 Bpe_Chr12 FPKM 31.777006 32.532948 18.094669 18.286215 58.038223 52.872765 56.619728 34.057735 36.448029 34.808323