Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00062 ATGGGTCGGGCGAGGTGTTTCTTGGACGTCAGCATCGGCGGCGAGGTGGAGGGGAGGATAGTGGTGGAGCTTTACGACGATTTGGTCCCAAAAACTGCTGAAAATTTCAGGGCTCTTTGCACTGGCGAGAAGGGTATTGATCCTAGTACCGGAGCGCCTCTCCATTACAAGGGCGTTTGTTTTCATCGTATCGTTAAAGGATTTATGGTGCAAGGAGGAGACATTACTGCCGGGAATGGTACAGGGGGAGCATCTATATATGGTACGAAATTCGAAGATGAGAATTTCGAACTCAAACACGAGAGGAAAGGAATGTTATCTATGGCTAACTCCGGGCCTAACACAAATGGATCTCAGTTTTTCATAACAACCACTCGGGCGTCTCATTTAGATGCAAAACATGTAGTGTTTGCAAGAGTAGTGAAAGGAATGGGAGTGGTTCGATCAATTGAGCATGTGACGACTGGTGAGGATGATCGTCCCACATCTGATGTTGTAATCGAGGATTGTGGAGAAATCCTGGATGGGGAAGATGACGGGATATCAAATTTTTTCAAAGACGGTGATACTTATCCTGATTGGCCGGTTGACCTTGATGAAGTTTCTGATGAACTCTCTTGGTGGATGGGGGCTGTGGATTCTGTTAAGGCTTTTGGCAATGAACATTACAAGAAACAAGACTACAAAATGGCTCTTAGAAAGTATCGGAAGGCTTTACGTTATCTTGATATATGCTGGGAGAAGGAAGGGATTGATGAAGAGAAGAGCGCATTCTTGCGGAAGACAAAGTCTCAAATATTCACAAACAGCTCTGCGTGTAAGTTGAAGATAGGAGATCTGAAAGGAGCTTTACTGGATACTGATTTTGCAATGCGAGATGGAGATAACAATGTAAAAGCTTTATTTCGCCAAGGTCAGGCATACATGGCGCTGAAGGATATTGATGCTGCAGTTGAAAGTTTCAAGAAAGCTTTGGATTTAGAGCCAAATGATGCTGGAATAAAGAAAGAGCTGGCTGCAGCCAAGAAGAAGATAGCTAATCGACGGGATCAGGAAAGAAAGGCATATGGCAAGATGTTCCAATAG 1086 44.29 MGRARCFLDVSIGGEVEGRIVVELYDDLVPKTAENFRALCTGEKGIDPSTGAPLHYKGVCFHRIVKGFMVQGGDITAGNGTGGASIYGTKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRASHLDAKHVVFARVVKGMGVVRSIEHVTTGEDDRPTSDVVIEDCGEILDGEDDGISNFFKDGDTYPDWPVDLDEVSDELSWWMGAVDSVKAFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEEKSAFLRKTKSQIFTNSSACKLKIGDLKGALLDTDFAMRDGDNNVKALFRQGQAYMALKDIDAAVESFKKALDLEPNDAGIKKELAAAKKKIANRRDQERKAYGKMFQ 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 455099 459073 - Bpe005300.1 Bpe12g00062 112075

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00062 361 ProSiteProfiles TPR repeat region circular profile. 298 331 - -
Bpe12g00062 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Bpe12g00062 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Bpe12g00062 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Bpe12g00062 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Bpe12g00062 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Bpe12g00062 361 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 171 IPR002130 GO:0000413|GO:0003755
Bpe12g00062 361 SUPERFAMILY Cyclophilin-like 3 178 IPR029000 -
Bpe12g00062 361 Gene3D Tetratricopeptide repeat domain 212 361 IPR011990 GO:0005515
Bpe12g00062 361 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 361 - -
Bpe12g00062 361 SMART tpr_5 298 331 IPR019734 GO:0005515
Bpe12g00062 361 SMART tpr_5 212 245 IPR019734 GO:0005515
Bpe12g00062 361 SUPERFAMILY TPR-like 213 355 IPR011990 GO:0005515
Bpe12g00062 361 Pfam Tetratricopeptide repeat 298 331 IPR001440 GO:0005515
Bpe12g00062 361 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP40 1 361 - -
Bpe12g00062 361 ProSiteProfiles TPR repeat profile. 298 331 IPR019734 GO:0005515
Bpe12g00062 361 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Bpe12g00062 361 Gene3D - 1 179 IPR029000 -
Bpe12g00062 361 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00062 K05864 PPID, CYPD; peptidyl-prolyl isomerase D [EC:5.2.1.8] - mnt:21410188 637.876
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00447 Bpe-Chr6:15822407 Bpe12g00062 Bpe-Chr12:455099 9.55E-57 dispersed
Bpe11g01314 Bpe-Chr11:9834352 Bpe12g00062 Bpe-Chr12:455099 2.87E-69 dispersed
Bpe12g00062 Bpe-Chr12:455099 Bpe15g00995 Bpe-Chr15:19472683 4.94E-58 dispersed
Bpe13g00911 Bpe-Chr13:15103459 Bpe12g00062 Bpe-Chr12:455099 7.04E-37 dispersed
Bpe15g01156 Bpe-Chr15:20458586 Bpe12g00062 Bpe-Chr12:455099 4.03E-34 dispersed
Bpe12g00062 Bpe-Chr12:455099 Bpe15g00827 Bpe-Chr15:18346034 1.59E-66 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g464 . . . . . Bpe12g00062 . . . Cmo11g01347 . Cma20g00888 . Car20g00765 . Cpe04g00267 . Bhi05g01141 . . . Hepe02g0569 . . Cla02g00581 Cam02g0614 Cec02g0613 Cco02g0629 Clacu02g0610 Cmu02g0607 Cre02g0938 . Cone8ag1151 Cone3ag1116 Cone10ag1127 Lsi10g00310 Csa07g00780 Chy11g00439 Cme01g00031 . Blo13g00569 Bda15g00028 . . . . . Sed05g3656 . Cmo20g00895 Cma11g01765 . Car11g01085 . . . Bhi10g02077 Tan05g1396 Cmetu11g0215 . Hepe08g1064 . . Cla09g01711 Cam09g1807 Cec09g1868 Cco09g1961 . . Cre01g0699 Lsi11g01025 Csa02g01199 Chy01g00036 Cme11g00511
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002414 1 5 1 0 1 2 2 2 2 2 2 2 2 2 2 1 2 3 2 2 2 2 2 2 2 2 2 2 6 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00062 Bpe_Chr12 FPKM 3.955742 3.35415 3.685848 3.869009 1.208201 1.519559 2.267419 2.379344 2.023917 2.618308