Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00064 ATGGAGCTCAAACAATCCGGCAACCCTCTTCCTTTCAAATTCAACGCCCACGCACCTGAATTCGTCCCCAGATCGCACTCCGAGATTCCCATCTCCAGTTTTTACTACCCTTTTTTCAGCTTTCTCTCTGGTGCCTCCGTCGCACCTGACTTGTTTGCTGTCGGAAATCAAGAATCCACTTTCTTGATCCCTAACCAGTCTGTCTCGCACCATAACTGTTCGAAGAATGTCCTCACTGACGATGTTCGTCGAAAGATCATCAATCAGGTGGAGTACCTGTTCAGCGATATGAATCTGATTGCAAATGAATCTTTTGCAAAACACGTGAATAAAGATCCCGAGGGTTATGTTTCATTATCTTTTGTGGCTTCAACTAAGAAAATCAAGTTCCTCACCACCAACAACCACATGCTTGCGCAAGCATTACGATCGTCTTCAAAGCTTGTTGTTAGCGAAGATGGCAAGAAGATTAGACGAAAGCACCCATTAACAGATAAAGAAAAAGAGGAATTGCAGGTAGAATTTGCTTGGAAAAAGCTTTTTGTTTTTTGCTCAATCAAAGTTTCGATACACTTCTCTTGCCTTTTGCAGTCTCGTACTGTCGTTGCGGAGAATTTGCCTGAAGATCACTCTTATCAGAATCTGCAGAAGCTATTTAGTTCTGTTGGGAGTGTAAAGACTATTCGGATGTGCCATCCTCAGGATTCAAACTCTTCTCGCCCAAAAGGGGAATTTTATTGTATCGGTAACAAGCTCCATGCGCTAGTGGAGTACGAGTCGCTAGACGTAGCAGAGAGAGCAGTCGAGAAGTTAACCGATGAGCGAAATTGGAGGAAAGGGCTTCGTGTAAGGCTGTTGCTTCGACTCTCGCCGAAGTCTGTTTTAAAAACCAGAAAGTCAGATTTTGATGGAATGTCTGATGATGATGATGCTCCATCCCCTGAATGTATGAAAGAGCCAATTGCAGAGATGGCCTCCAATAGGAATGTAAGTGTGAAGGGTGAAGAAAGCATGACGGGATCAAAGAAGGGATGGAACCGGGGACATGGGAAGGGTAGAGGAAGATCTCAAAACCACGTTGGACAGGGTGTGGTGGCCGCAGCCCCATCTCCACGACCAATCGGCAGCACAATGCAGGTGGAAGTGATCCACTCCAAACACAATTCCAAGGGCCCTAGAATGCCAGATGGGACAAAGGGTTTCGCCGTGGGAAGAGGCAAGTCGATAAGAACTGGACCCGCACTGGCTGAACCTTTGTTGGATCGATAA 1269 45.94 MELKQSGNPLPFKFNAHAPEFVPRSHSEIPISSFYYPFFSFLSGASVAPDLFAVGNQESTFLIPNQSVSHHNCSKNVLTDDVRRKIINQVEYLFSDMNLIANESFAKHVNKDPEGYVSLSFVASTKKIKFLTTNNHMLAQALRSSSKLVVSEDGKKIRRKHPLTDKEKEELQVEFAWKKLFVFCSIKVSIHFSCLLQSRTVVAENLPEDHSYQNLQKLFSSVGSVKTIRMCHPQDSNSSRPKGEFYCIGNKLHALVEYESLDVAERAVEKLTDERNWRKGLRVRLLLRLSPKSVLKTRKSDFDGMSDDDDAPSPECMKEPIAEMASNRNVSVKGEESMTGSKKGWNRGHGKGRGRSQNHVGQGVVAAAPSPRPIGSTMQVEVIHSKHNSKGPRMPDGTKGFAVGRGKSIRTGPALAEPLLDR 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 463534 465871 - Bpe005302.1 Bpe12g00064 112077

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00064 422 Pfam Ataxin-2 C-terminal region 10 26 IPR009818 -
Bpe12g00064 422 Pfam La domain 86 143 IPR006630 -
Bpe12g00064 422 SUPERFAMILY Winged helix DNA-binding domain 78 163 IPR036390 -
Bpe12g00064 422 PANTHER LUPUS LA PROTEIN-RELATED 196 411 IPR045180 -
Bpe12g00064 422 PANTHER LUPUS LA PROTEIN-RELATED 8 173 IPR045180 -
Bpe12g00064 422 PANTHER LA-RELATED PROTEIN 6C 196 411 - -
Bpe12g00064 422 Gene3D - 196 286 IPR012677 -
Bpe12g00064 422 SUPERFAMILY RNA-binding domain, RBD 196 286 IPR035979 GO:0003676
Bpe12g00064 422 SMART la 80 160 IPR006630 -
Bpe12g00064 422 MobiDBLite consensus disorder prediction 330 361 - -
Bpe12g00064 422 Gene3D - 78 167 IPR036388 -
Bpe12g00064 422 ProSiteProfiles La-type HTH domain profile. 76 167 IPR006630 -
Bpe12g00064 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 272 IPR000504 GO:0003723
Bpe12g00064 422 PANTHER LA-RELATED PROTEIN 6C 8 173 - -
Bpe12g00064 422 MobiDBLite consensus disorder prediction 385 422 - -
Bpe12g00064 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 288 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00064 K15191 LARP7; La-related protein 7 - pvy:116143325 431.795
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01740 Bpe-Chr2:19801897 Bpe12g00064 Bpe-Chr12:463534 1.36E-06 dispersed
Bpe03g00209 Bpe-Chr3:2545839 Bpe12g00064 Bpe-Chr12:463534 1.70E-08 dispersed
Bpe12g00064 Bpe-Chr12:463534 Bpe10g00167 Bpe-Chr10:4078070 2.01E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g467 . . . . . Bpe12g00064 . . . . Cma02g00438 . Car02g00296 . . . . . . . . . . . . . . . . . . Cone12ag1111 Cone8ag1153 . . Lsi10g00312 . Chy11g00436 . . Blo13g00567 Bda15g00027 . . . . . Sed01g0334 Cmo02g00443 . . . . . . Cpe05g01224 Bhi10g02075 Tan05g1392 Cmetu11g0139 . . . . Cla09g01715 Cam09g1809 Cec09g1871 Cco09g1964 . . Cre01g0696 . Csa02g01201 . Cme11g00508
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008129 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00064 Bpe_Chr12 FPKM 45.326744 49.65892 58.147141 57.83588 73.551903 71.415443 76.700058 98.990181 99.51474 95.955032