Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00069 ATGAAAGCAATGGAGAGCTTGGAAGATCTGATTGAGGAAGTTAAGGTTCGGACACTTTGGTGGGCTTTGTGTATTTTCGGCATGGCCTACTTTTTGACCCTTAATGTGGATGATGCTGTGGATGACATTGTACGCCAGTTTAAAGGGGTTTCTGACGGATTGATACGCAAAGTTGTTGGTTCACCATCTCCTGCTTTTGATGCCTCTTCTTCAATTTGGGATCAAACATTATCCTTGAATCCAGATGACTTAAATCAACATATTTCTAGACACTATAGTGCAGACGTGGCTAATAGTTATTCTGATAATGAGGAAGATGGAAAAGATCAAAGCAATACTCGTGAAGATGTCATTGGATGGCATTCAGATACCGAGTTGAACACCAAAAGTTTTCCACCTAGGGTGGTCAAGCGTGTTGAAGAGAATCGAGGTGTACATTCAGATAAAAAACTCAATTCAGGGGTGAAATATGGGAATAGCCAGGAAGGAGTTTCGGTAACCTCATATGACTTAGAAGATGTTGGTGTGCCGCCTGAGTGGACCCCACCTAATGTTAGTGTGCCTTTGCTGAATTTGGTTGATAAAATATTTCAGCTAAACCGAAGAGGCTGGATAAGAAGACAGGTCCTTTGGATATCAAAACAGATTCTGCAGTTAATAATGGAGGATGCCCTGGACGATTGGCTTTTGAGACAGATACATTGGCTTCGAAGAGATGATATCATAGCTGAAGGAATTCGATGGGTTCAAGATATTTTGTGGCCAGATGGGACTTTCTTTCTAAGATTGAGGGATGTTCAATGTGAAGGTGATGATACTCAACATGATAAAAGATCGTTTCAAACTACAAGTCAACCTGGTGGCAGCAAGTTCTCTAAGCCGGGGTCTTTTGAGGAGCAGCTTGAGGCAGCTCGAAGAGCTAGTGCTGTCAAGAAATTGCTGTTTGGTGGAGCTCCTACGACCTTGGTGAGCTTGATAGGACACAAACAGTACAAACGATGTGCGAAAGATATTTACTACTTTACCCAATCTACCGTCTGCGTGAAACAACTCGCCTTTGGAGTACTTGAACTCTTACTCATCTCAATTTTTCCCGAGCTTCGGAATCTAGTGTTGGAGTTACACGAGAAGATGCATAGAATACCAGACAATTTTGTAAGGAAGATCAGAGATGAGCTTTCTGCAGTTGCTACTCTTGTCGTTCCTGCTGGTCATGCATGGCATGTAGGCCTAAGAAAAGCAGATAACAAGTTTTGGTTCAGAGAAGGGTGGCAGGAATTTGTCGACCATTACTCGATACGTGTGGGTTACTTTCTGGTATTCAGATACGAAGGGAATTCTTCTTTTGTTGTTTATATATTCAATCTCAGTTCGTCCGAAATAAATTATCAATCTGCCAATCTCAGTATCAGTCAACTGTCCAAGTATTACAGTCGAAGTGCTGTATTTGAAGAAATAGAAGATGATGACTCAGTTGACATTGTGGGTTCTTCACTTCTGAACTTGAATTCGGAAAAAAATAAAGCATTTGTCGATGGTTCAGAACCACTGAGATCTATCAAAATTCATAGGCCTTTGGCACTGCAAAATTTGTTTAATGGATCGAAACTGAATTGCATAAATTGGTCTAACGATGGTAGCTTGGATCCAACTACAGCGGGCAGCAATTCAACGTCAGATTTTCGATCTACACAACGTAATACGGTTCAAATTAGTATTGCAGAGCCAAAAAAGTCTATGGACGACGTAGAACGGCAGATTTTAGATGATGAAATGCAAAATCTTAATAAGAGGGGAAGAAAGAAGAGGAAAACAGATGGGAATGAGCTTGGACCATCTTCTCAAAATGAGGAGGAAGTAGAAATGCGCTATAAGTTTTACAAAAGTGCTTCTGCGAGAAAAAGGACGGTGATTGCCGAAGAACGAGAAAGGGTTGTCAATGCATCCAAAGCTTTTGAGCCTGTTAATCCCTTCTGTCGAGTTGTTTTGAGACCTTCATATCTATATCGAGGTTGTATAATGTACTTGCCGTCGTGCTTTGCTGAAAAGAACCTGAGTGGCGTTTCAGGATTCATCAAACTTCAGATTTCTGATGGGAGACAGTGGTCGGTTCGATGTCTTAATAAAGGAGGTAAAACGAAGTTGAGTCAAGGTTGGTACGAATTTTGCTTAGAAAATAATTTGGGTGAAGGAGATGTTTGTGTGTTTGAGTTGATCAAGGCCAGAGAAATTGTGCTAGAAGTTACCATGTTTCGAGTCATTGAAGAAGCTCGATTCGCAAACCTGGCTCCATTGCAGAGCTTCGGTAAACTCGTTAGAAAATAA 2325 41.12 MKAMESLEDLIEEVKVRTLWWALCIFGMAYFLTLNVDDAVDDIVRQFKGVSDGLIRKVVGSPSPAFDASSSIWDQTLSLNPDDLNQHISRHYSADVANSYSDNEEDGKDQSNTREDVIGWHSDTELNTKSFPPRVVKRVEENRGVHSDKKLNSGVKYGNSQEGVSVTSYDLEDVGVPPEWTPPNVSVPLLNLVDKIFQLNRRGWIRRQVLWISKQILQLIMEDALDDWLLRQIHWLRRDDIIAEGIRWVQDILWPDGTFFLRLRDVQCEGDDTQHDKRSFQTTSQPGGSKFSKPGSFEEQLEAARRASAVKKLLFGGAPTTLVSLIGHKQYKRCAKDIYYFTQSTVCVKQLAFGVLELLLISIFPELRNLVLELHEKMHRIPDNFVRKIRDELSAVATLVVPAGHAWHVGLRKADNKFWFREGWQEFVDHYSIRVGYFLVFRYEGNSSFVVYIFNLSSSEINYQSANLSISQLSKYYSRSAVFEEIEDDDSVDIVGSSLLNLNSEKNKAFVDGSEPLRSIKIHRPLALQNLFNGSKLNCINWSNDGSLDPTTAGSNSTSDFRSTQRNTVQISIAEPKKSMDDVERQILDDEMQNLNKRGRKKRKTDGNELGPSSQNEEEVEMRYKFYKSASARKRTVIAEERERVVNASKAFEPVNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQISDGRQWSVRCLNKGGKTKLSQGWYEFCLENNLGEGDVCVFELIKAREIVLEVTMFRVIEEARFANLAPLQSFGKLVRK 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 482836 494979 + Bpe005307.2 Bpe12g00069 112082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00069 774 MobiDBLite consensus disorder prediction 591 617 - -
Bpe12g00069 774 CDD B3_DNA 380 455 IPR003340 GO:0003677
Bpe12g00069 774 PANTHER B3 DOMAIN-CONTAINING 374 767 - -
Bpe12g00069 774 ProSiteProfiles B3 DNA-binding domain profile. 659 754 IPR003340 GO:0003677
Bpe12g00069 774 Pfam Sorting nexin C terminal 204 345 IPR013937 -
Bpe12g00069 774 Pfam B3 DNA binding domain 377 455 IPR003340 GO:0003677
Bpe12g00069 774 Pfam B3 DNA binding domain 662 752 IPR003340 GO:0003677
Bpe12g00069 774 MobiDBLite consensus disorder prediction 272 294 - -
Bpe12g00069 774 SUPERFAMILY DNA-binding pseudobarrel domain 377 456 IPR015300 -
Bpe12g00069 774 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 374 767 - -
Bpe12g00069 774 Gene3D - 636 756 IPR015300 -
Bpe12g00069 774 SMART B3_2 370 457 IPR003340 GO:0003677
Bpe12g00069 774 SMART B3_2 659 754 IPR003340 GO:0003677
Bpe12g00069 774 MobiDBLite consensus disorder prediction 591 608 - -
Bpe12g00069 774 ProSiteProfiles B3 DNA-binding domain profile. 364 457 IPR003340 GO:0003677
Bpe12g00069 774 CDD B3_DNA 657 752 IPR003340 GO:0003677
Bpe12g00069 774 Gene3D - 368 458 IPR015300 -
Bpe12g00069 774 SUPERFAMILY DNA-binding pseudobarrel domain 653 752 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00232 Bpe-Chr6:12444452 Bpe12g00069 Bpe-Chr12:482836 6.52E-13 dispersed
Bpe12g00069 Bpe-Chr12:482836 Bpe13g00931 Bpe-Chr13:15221487 8.28E-08 dispersed
Bpe06g00731 Bpe-Chr6:17765503 Bpe12g00069 Bpe-Chr12:482836 1.16E-52 transposed
Bpe12g00069 Bpe-Chr12:482836 Bpe15g00884 Bpe-Chr15:18785156 0 wgd
Bpe12g00069 Bpe-Chr12:482836 Bpe05g00071 Bpe-Chr5:1243427 6.96E-09 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22163 PF08628 Nexin_C 1.10E-31 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00069 K17925 - mnt:21409635 477.633