Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00071 ATGAGAAACGAGAAGGGCGGAGCTGGTTATCGTGGCCGTAAGAAATTCGGTGCTCTCTTAGATTCGGATTCTCCTACTTCCTCTTGTGCTGAAATGGACGTTTATAATCAGCGGGAAAGCTCCGGAGAGTATTCTCCCAGTGGTATGTCCGCGGAAATTCTGGCGTATTACGATAATTCGCCGTCGCCGGCGAGAAGCGACGGCTCGCCTTATCCAATGTCGCCGTGGGATCAGTCATCTCCGTACACCAAATCACCATGGATAGTACCACCGGCTTTAACTTATCTCGACGAAAATCTTTCTCGCAAAGGCCTCATCGGCTCGTTGGTAAGAGAAGATGGCCACGTATACTCACTCGCCGTTTCCGGAGATTTGTTATACACAGGGTCCGACAGCAAGAATATTCGGGTTTGGAAGAATTTGAAGGATTTTACTGGTTTCAAATCAAATAGTGGATTGGTAAAAGCTATTGTAGTCTGCGGCGACAGGATCTTTACGGGTCACCAAGATGGAAAGATCCGAGTATGGAAGCTTTCGTCTTCGCCCAAGAATTCGACTAATCATAAGCGGATCGGAAGCTTACCGTCATTCAAAGACTCCATAAAGAACTCGATGAGCCCAAAGAATTACATTCAGGCCAGCCGCCACCGGAACGTTCTTCGAATAAAGCATTTCGACGCAGTTTCATGCATGAGCTTAAACAAAGAGCAAGGGATGTTATACTCAGGGTCGTGGGATAAATCAGTGAAGGTGTGGCGCATTGTCAATTGGGAATTCTTGGAGTCAATTGCTGCCCATGAAGACGCCGTGAATTCCATCGTTTCCGGTTTTGATAGTTTTCTTTTTACGGGATCTGCCGACGGCACGGTGAAGGTATGGCGGAGGGAGTTGCAGGGTAGAATGACGAAACATTTTTTAGTTCAGGTGTTGCTGAAGCAGGAGAGTGCGGTAACGTCATTGGCAGTGAACCGTTCATCGGCAGTGGTTTACTGCGGATCATCTGATGGGTTAGTGACTTTTTGGGAGGGAGAGAAGCTTTTTTCTACCGGGGGGACTCTTCGGGGGCACAAGTTAGCGGTTCTGTGCTTATCCACTGCGGGACGCTTGGTTTTCAGTGGGTCCGCTGATAAGAATATCTGCGTGTGGAAGAGGGAAGAGGGAAGTGGTTCCCACACTTGCTTTTCGGTTTTCACCGGCCACACAGGGCCGGTGAAGTGCTTGGCCGTTGATGAAGATGAGTGGCGGGAGCGTCGGGAGGAAAAAGGGACAAAGATAGGTGATCGTCAGTGGGTGGTTTACAGCGGGAGCTTGGATAAGTCTGTCAAAGTATGGAGAATATCAGAGCAAGTGCCGGAATTGTGTCGGCCGAGCTTTCCTTCCTCGCCGTGTATAATGGGTTAG 1401 49.18 MRNEKGGAGYRGRKKFGALLDSDSPTSSCAEMDVYNQRESSGEYSPSGMSAEILAYYDNSPSPARSDGSPYPMSPWDQSSPYTKSPWIVPPALTYLDENLSRKGLIGSLVREDGHVYSLAVSGDLLYTGSDSKNIRVWKNLKDFTGFKSNSGLVKAIVVCGDRIFTGHQDGKIRVWKLSSSPKNSTNHKRIGSLPSFKDSIKNSMSPKNYIQASRHRNVLRIKHFDAVSCMSLNKEQGMLYSGSWDKSVKVWRIVNWEFLESIAAHEDAVNSIVSGFDSFLFTGSADGTVKVWRRELQGRMTKHFLVQVLLKQESAVTSLAVNRSSAVVYCGSSDGLVTFWEGEKLFSTGGTLRGHKLAVLCLSTAGRLVFSGSADKNICVWKREEGSGSHTCFSVFTGHTGPVKCLAVDEDEWRERREEKGTKIGDRQWVVYSGSLDKSVKVWRISEQVPELCRPSFPSSPCIMG 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 500549 501949 - Bpe005309.1 Bpe12g00071 112084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00071 466 ProSiteProfiles Trp-Asp (WD) repeats profile. 161 186 IPR001680 GO:0005515
Bpe12g00071 466 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 11 453 - -
Bpe12g00071 466 MobiDBLite consensus disorder prediction 1 30 - -
Bpe12g00071 466 Pfam WD domain, G-beta repeat 140 177 IPR001680 GO:0005515
Bpe12g00071 466 Pfam WD domain, G-beta repeat 262 293 IPR001680 GO:0005515
Bpe12g00071 466 Pfam WD domain, G-beta repeat 393 444 IPR001680 GO:0005515
Bpe12g00071 466 Pfam WD domain, G-beta repeat 350 383 IPR001680 GO:0005515
Bpe12g00071 466 Pfam WD domain, G-beta repeat 223 252 IPR001680 GO:0005515
Bpe12g00071 466 Pfam WD domain, G-beta repeat 113 139 IPR001680 GO:0005515
Bpe12g00071 466 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 11 453 IPR045182 -
Bpe12g00071 466 Gene3D - 98 215 IPR015943 GO:0005515
Bpe12g00071 466 PRINTS G protein beta WD-40 repeat signature 432 446 IPR020472 -
Bpe12g00071 466 PRINTS G protein beta WD-40 repeat signature 240 254 IPR020472 -
Bpe12g00071 466 PRINTS G protein beta WD-40 repeat signature 281 295 IPR020472 -
Bpe12g00071 466 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 293 - -
Bpe12g00071 466 SMART WD40_4 303 342 IPR001680 GO:0005515
Bpe12g00071 466 SMART WD40_4 215 253 IPR001680 GO:0005515
Bpe12g00071 466 SMART WD40_4 256 294 IPR001680 GO:0005515
Bpe12g00071 466 SMART WD40_4 346 383 IPR001680 GO:0005515
Bpe12g00071 466 SMART WD40_4 140 177 IPR001680 GO:0005515
Bpe12g00071 466 SMART WD40_4 390 445 IPR001680 GO:0005515
Bpe12g00071 466 SMART WD40_4 102 139 IPR001680 GO:0005515
Bpe12g00071 466 CDD WD40 113 445 - -
Bpe12g00071 466 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 221 254 - -
Bpe12g00071 466 SUPERFAMILY WD40 repeat-like 105 451 IPR036322 GO:0005515
Bpe12g00071 466 Gene3D - 303 457 IPR015943 GO:0005515
Bpe12g00071 466 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 262 IPR001680 GO:0005515
Bpe12g00071 466 Gene3D - 216 302 IPR015943 GO:0005515
Bpe12g00071 466 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 293 IPR001680 GO:0005515
Bpe12g00071 466 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 342 IPR001680 GO:0005515
Bpe12g00071 466 ProSiteProfiles Trp-Asp (WD) repeats profile. 353 392 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00071 - - - zju:107435548 588.186
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g00404 Bpe12g00071 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00071 Bpe-Chr12:500549 Bpe15g00355 Bpe-Chr15:15083230 2.36E-160 dispersed
Bpe12g00071 Bpe-Chr12:500549 Bpe07g00404 Bpe-Chr7:3892838 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g527 . Blo15g00718 Bda06g01024 Bda08g01318 Bpe07g00404 Bpe12g00071 . Bma12g00483 Cmo19g00652 Cmo11g01329 . . . . Sed11g0992 . . Bhi05g01171 Tan02g1913 Cmetu03g1602 . Hepe02g0551 . . Cla02g00560 Cam02g0588 Cec02g0589 Cco02g0600 Clacu02g0586 Cmu02g0584 Cre02g0914 . . . . . Csa07g00816 . . . Blo13g00559 Bda15g00021 Bda14g00532 . . . . . . . Cma11g01780 Cma19g00639 . . . . . . . . . . . . . . . . . . . . Chy01g00013 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009507 6 1 2 1 2 1 0 1 1 1 1 1 2 0 1 2 1 0 0 1 1 1 1 1 0 0 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00071 Bpe_Chr12 FPKM 23.868599 29.787098 11.368262 13.282652 10.511235 8.545772 14.176897 4.653258 4.697908 5.859811