Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00080 ACTAGGGTTCTGACTACCTCTCTTTCTTGTGCTTCCCCCATTTCCCCTCTTTTTTCTTCCCCTGCAATTGTAATGGCCGCCGTCGATGAGTTTCGGTTGTTCGTCGGTGGACTTGCTTGGGCCACCGATGAGCAAGCCCTTGAGCAGGCATTTTCCTCTTATGGCGATGTCGTTGAATCGAAGATTATTAATGACCGCGAGACCGGCAGATCTAGGGGTTTCGGATTTGTGACCTTCAGTAACGAGAAGTCCATGAAGGAAGCCATCGAAGGTATGAACGGCCAAAGCCTTGACGGTCGCAATATCACCGTCAACGAGGCACAGTCACGTGGAAGCGGTGGTGGCGGCGGTGGATTTGGCCGTGGTGGAGGAGGAGGAGGTTACGGACGAGGTGGTGGTGGTGGTGGATATGGCGGGGGCGGTGGTCGCCGTGATGGTGGTGGTTACGATCGTGGAAACGGAGGAGGATATGGCGGTGGTGGACGCGACCGTGGATATGGTGACGGTGGATCTCGCTACTCCAGGGGTGGAGGTGGCTCAGATGGTGGTAACTGGAGGAATTAA 564 55.5 TRVLTTSLSCASPISPLFSSPAIVMAAVDEFRLFVGGLAWATDEQALEQAFSSYGDVVESKIINDRETGRSRGFGFVTFSNEKSMKEAIEGMNGQSLDGRNITVNEAQSRGSGGGGGGFGRGGGGGGYGRGGGGGGYGGGGGRRDGGGYDRGNGGGYGGGGRDRGYGDGGSRYSRGGGGSDGGNWRN 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 557093 557922 + Bpe005319.1 Bpe12g00080 112093

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00080 187 MobiDBLite consensus disorder prediction 138 187 - -
Bpe12g00080 187 SUPERFAMILY RNA-binding domain, RBD 26 141 IPR035979 GO:0003676
Bpe12g00080 187 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 25 187 - -
Bpe12g00080 187 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723
Bpe12g00080 187 SMART rrm1_1 32 105 IPR000504 GO:0003723
Bpe12g00080 187 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 102 IPR000504 GO:0003723
Bpe12g00080 187 Gene3D - 20 161 IPR012677 -
Bpe12g00080 187 PANTHER GEO13361P1-RELATED 25 187 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00080 - - K13195 jre:109011181 150.214
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe12g00080 Bpe15g00866 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01661 Bpe-Chr4:22697505 Bpe12g00080 Bpe-Chr12:557093 1.30E-20 dispersed
Bpe04g01898 Bpe-Chr4:23974490 Bpe12g00080 Bpe-Chr12:557093 1.73E-24 dispersed
Bpe08g00455 Bpe-Chr8:2894500 Bpe12g00080 Bpe-Chr12:557093 6.60E-15 dispersed
Bpe12g00080 Bpe-Chr12:557093 Bpe13g00870 Bpe-Chr13:14863010 1.15E-29 dispersed
Bpe15g00581 Bpe-Chr15:16771819 Bpe12g00080 Bpe-Chr12:557093 1.49E-21 dispersed
Bpe12g00080 Bpe-Chr12:557093 Bpe15g00866 Bpe-Chr15:18625804 1.49E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g597 . . . . . Bpe12g00080 . . . . Cma02g00400 Cma20g00852 . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00366 . Chy11g00381 . Blo04g00512 Blo13g00553 Bda15g00006 Bda14g00554 Bpe15g00866 . Bma03g00552 . Sed01g0304 Cmo02g00405 Cmo20g00861 . . . . . Cpe05g01257 Bhi10g02015 Tan05g1313 Cmetu11g0750 . Hepe08g1018 . . . . . . . . . . Csa02g01253 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004876 2 1 2 1 2 1 0 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 2 0 1 1 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00080 Bpe_Chr12 FPKM 12.307531 14.949475 21.862865 21.832697 21.184557 20.629478 21.948179 18.954527 18.417864 21.680031