Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00097 ATGGAGCTCAATCTAGTTTTGTTGATCAGATCGCTTTGGATTGCGGCGACTCTGCCTATGCTCGTTGCTTTCTTGCCCTTCTCTTGGTTGAGACCGTTTCATGCAACTGTGTTGGGGTTTGCCAGGAGAGGAAAGATCATGAAGTCATCTCATAAATTCACTGTTCCACAAAAGTTCTTCTGTCATTTCTATGTGCTGGCTGTGATCTGGACTACAATATTGCTTGTATCAACTTGGATGTATGCATATAGCCTCACTCCAGTGCTCTCGAAATCATTTGTTTATTCCACCATTACCAGCCAGTTGACTGGAGGTTCCCATTTCTTCTCCTCGCACAAATCTCCTCCGACTCCAAGGGATCAGTGGTTAATGGTTTGGCAATCAGTTTTTTCGCTTTTGTTGATGGAGGTTCAAGTTTTAAGACGCCTTTATGAAACTGTATACGTCTTCAACTACAGCCCCTCTGCTAGGATGCACATTTTTGGTTATCTAACTGGCCTATATTTCTACACAGCTGCTCCGCTGTCCCTTTGTTGTAACTGCATGGCGGAAACCTGTAAATTTACAGCAAACTTAGTTGCAGAGTTCGCTGTCAAGGGGAAAAGGCAAATGCCAGACATCGATTTCAATTTGTGGGAATTATTTTATCCTTTGACAAAGCTTGGGTGGAATCAGTGGATTGGTGCAGCTATATTTTTGTGGGGTTGGATTCATCAGCGTCGATGTCACACAATTTTGGGCTCTCTTCGACAACATCGTGATCAAAATGAAGACTACGTGATCCCTCGGGGCGATTGGTTTGAAGTTGTTTCATCCCCGCATTATCTTGCTGAGATTGTGATATATGCTGGTCTAGTGACAGCAAATGGAGGAGACCTTTCGGTCTGGCTTTTGTTTGCATTTGTGATGATGGAAAACATGCTTCTACAAGAAGGTGATAGAGTGAAAGTGAAAAATGTAACTCTTCCAAAGGGAACTTACGTAAAATTGCAACCCCACACAAAAGATTTTTTGGATATATCTAATCCTAAAGCAATCTTGGAGACAACATTGAGGAATTTTTCCTGTTTAACCACTGGGGATAGTATTATGGTCGCATATAATAACAAGAAATATTATATCGATATTATTGAAGCAAAGCCTTCCAATGCCATTAGTATTATTGAGACTGACTGTGAGGTCGATTTTGCTCCTCCATTGGATTACAAGGAACCAGAAAAGCCTATGCGCAGTCAGTCAAACAAGGCACAGCCAGTTGAAGAGGCTCCAGAAGAACCTGAGCCTGGATTTAGTGCTTTTACTGGGGTAGGAAGACGATTGGACGGAAAACCATTGAAGTATCAACCTTCACCAGTTTTTTCAAGTGGGTCGAAAGATAAGAAACCCGAGACTAGGAATCGTACCAATGCACAACCTTCGGCAGCATCTACCTCTCAGAACACTTCTCCTCAATCTCAAGGAAAGCTTGTGTTTGGATCGAATGTAAACCGAGTTCCTAAAGAAACAAAGGAGACCAAAGAGACAAAACAAGATCAGTCAATGAAGAAAGAGGAGCCAAAATTCCAACCTTTTACCGGAAAAGGTCGATCTCTGAGAGGTTGA 1602 42.26 MELNLVLLIRSLWIAATLPMLVAFLPFSWLRPFHATVLGFARRGKIMKSSHKFTVPQKFFCHFYVLAVIWTTILLVSTWMYAYSLTPVLSKSFVYSTITSQLTGGSHFFSSHKSPPTPRDQWLMVWQSVFSLLLMEVQVLRRLYETVYVFNYSPSARMHIFGYLTGLYFYTAAPLSLCCNCMAETCKFTANLVAEFAVKGKRQMPDIDFNLWELFYPLTKLGWNQWIGAAIFLWGWIHQRRCHTILGSLRQHRDQNEDYVIPRGDWFEVVSSPHYLAEIVIYAGLVTANGGDLSVWLLFAFVMMENMLLQEGDRVKVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNFSCLTTGDSIMVAYNNKKYYIDIIEAKPSNAISIIETDCEVDFAPPLDYKEPEKPMRSQSNKAQPVEEAPEEPEPGFSAFTGVGRRLDGKPLKYQPSPVFSSGSKDKKPETRNRTNAQPSAASTSQNTSPQSQGKLVFGSNVNRVPKETKETKETKQDQSMKKEEPKFQPFTGKGRSLRG 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 697312 703995 - Bpe005337.1 Bpe12g00097 112110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00097 533 ProSiteProfiles Steroid 5-alpha reductase C-terminal domain profile. 228 303 IPR001104 GO:0006629|GO:0016627
Bpe12g00097 533 MobiDBLite consensus disorder prediction 467 492 - -
Bpe12g00097 533 MobiDBLite consensus disorder prediction 499 523 - -
Bpe12g00097 533 Pfam 3-oxo-5-alpha-steroid 4-dehydrogenase 223 305 IPR001104 GO:0006629|GO:0016627
Bpe12g00097 533 MobiDBLite consensus disorder prediction 398 533 - -
Bpe12g00097 533 Pfam Ubiquitin fusion degradation protein UFD1 301 399 IPR004854 GO:0006511
Bpe12g00097 533 PANTHER DFG10 PROTEIN 2 304 IPR039698 GO:0003865|GO:0006488
Bpe12g00097 533 Gene3D - 324 397 - -
Bpe12g00097 533 PANTHER POLYPRENOL REDUCTASE 2-LIKE 2 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00097 K12345 SRD5A3; 3-oxo-5-alpha-steroid 4-dehydrogenase 3 / polyprenol reductase [EC:1.3.1.22 1.3.1.94] - jre:108987005 432.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00097 Bpe-Chr12:697312 Bpe12g00204 Bpe-Chr12:1625300 7.06E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g54 . . . . . Bpe12g00097 . . . . . . . . Sed05g2282 Cpe04g00096 . Bhi05g01779 Tan02g0746 Cmetu01g1015 . Hepe02g0462 . . Cla02g00477 Cam02g0485 Cec02g0487 Cco02g0492 Clacu02g0487 Cmu02g0483 Cre02g0818 . . . . . Csa07g00047 . . . Blo13g00532 Bda15g01062 . . . . Bma08g00778 . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01146 . Chy01g00733 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007485 1 2 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 0 1 1 1 1 1 2 1 1 1 1 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00097 Bpe_Chr12 FPKM 10.94276 14.071779 5.822338 10.359393 10.121215 8.043159 6.098002 8.909952 6.873317 8.599546