Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00098 ATGAATAAGAAGATCATGTCCATTATAGCAGAGAGGGATGCAGCGATCCGAGAATGTAATATTGCGCTCTCTGAGAAGAACGAAGCTTTGGCCGTGCGGGATGAGGCTCTTCGGCAGAGAGATGAAGCTCTTAATCAGCGAGATACTGCACTAATGGAACGAGACAATGCCCTTGCAGCACTTCAAATTCGTGATCATGGTGCCCCAATGGGCTGTTCAATCCAGCGCAAAAATAAGCGTTTGCACCACCCTTCAAACCACTTAGCAAATATGACAGAAGCTCCATACAGTGCTAAAGAACATCAAATAACTGAAGCTTTTCCAATTACAGCCATAGCTTCCGAGGCTGTTAAGTCCCAACGAGGAAAGCAAACAAAGGAGAACAAAGTGGTTTCATCTAAATCACAGAGGGCACCTAGGAAGAAAGTGGGCGAAGATTTGAATAGACAAGCTGCCTCTGATGGGATAAAGTACAGAACTGATTGGGACGTTCAGGACATGGGGCTGAACCTTGTTAGTTTTGATGAATCTATCATGCCAGCTCCAATTTGCACGTGCACCGGAATTCCTAGACAATGCTATAAATGGGGGAATGGAGGGTGGCAGTCATCTTGCTGCACCATCAATATGTCACAGTATCCACTTCCACAAATGCCTAACAAGCAACATGCCAGAATGGGAGGACGAAAAATGAGTGGAAGTGTCTTTGCTCGATTGCTTAGCAGGCTAGCAGCAGAAGGCCATGATCTTTCAGTATCAGTGGATCTCAAGGACCACTGGGCTAGACATGGAACAAACCGCTATATTACAATCAGGTAG 819 45.67 MNKKIMSIIAERDAAIRECNIALSEKNEALAVRDEALRQRDEALNQRDTALMERDNALAALQIRDHGAPMGCSIQRKNKRLHHPSNHLANMTEAPYSAKEHQITEAFPITAIASEAVKSQRGKQTKENKVVSSKSQRAPRKKVGEDLNRQAASDGIKYRTDWDVQDMGLNLVSFDESIMPAPICTCTGIPRQCYKWGNGGWQSSCCTINMSQYPLPQMPNKQHARMGGRKMSGSVFARLLSRLAAEGHDLSVSVDLKDHWARHGTNRYITIR 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 706631 707449 + Bpe005338.1 Bpe12g00098 112111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00098 272 MobiDBLite consensus disorder prediction 120 148 - -
Bpe12g00098 272 PANTHER PROTEIN BASIC PENTACYSTEINE4 1 272 - -
Bpe12g00098 272 MobiDBLite consensus disorder prediction 118 150 - -
Bpe12g00098 272 Coils Coil 26 53 - -
Bpe12g00098 272 Pfam GAGA binding protein-like family 1 272 IPR010409 -
Bpe12g00098 272 PANTHER - 1 272 IPR010409 -
Bpe12g00098 272 SMART GAGA_bind_2 1 272 IPR010409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00098 - - - qsu:112013863 451.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01623 Bpe-Chr11:12365775 Bpe12g00098 Bpe-Chr12:706631 2.22E-38 dispersed
Bpe11g01624 Bpe-Chr11:12371579 Bpe12g00098 Bpe-Chr12:706631 5.80E-41 dispersed
Bpe12g00098 Bpe-Chr12:706631 Bpe02g01724 Bpe-Chr2:19697508 6.86E-114 wgd
Bpe12g00098 Bpe-Chr12:706631 Bpe05g00134 Bpe-Chr5:3101954 2.49E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g55 . . . . . Bpe12g00098 . . Cmo19g00710 . . . . . Sed11g1487 Cpe04g00095 Cpe15g00568 Bhi05g01776 Tan02g2047 Cmetu03g1142 . . . . Cla02g00476 Cam02g0483 Cec02g0485 Cco02g0490 Clacu02g0486 Cmu02g0481 Cre02g0816 Cone12ag1196 Cone8ag1244 . . . Csa07g00049 . Cme01g01320 . Blo13g00531 Bda15g01061 . . . . Bma08g00777 . . . . Cma19g00701 . Car19g00543 . . . . . . . . . . . . . . . . Lsi11g01148 . Chy01g00732 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe10g00970 . 1 280 BBR/BPC Transcription factor family AT2G01930 55.4 1.9e-81 299.3
Bpe11g01624 . 1 281 BBR/BPC Transcription factor family AT2G01930 56.3 2.1e-80 295.8
Bpe10g00971 . 16 293 BBR/BPC Transcription factor family AT2G01930 54.7 4.8e-77 284.6
Bpe11g00306 . 112 222 BBR/BPC Transcription factor family AT2G01930 58.6 7.5e-38 154.5
Bpe11g00306 . 104 222 BBR/BPC Transcription factor family AT2G35550 73.9 9.6e-52 200.3
Bpe10g00970 . 159 280 BBR/BPC Transcription factor family AT2G35550 57.4 3.4e-41 165.2
Bpe11g01624 . 161 281 BBR/BPC Transcription factor family AT2G35550 57.9 7.6e-41 164.1
Bpe11g01623 CCT 147 267 BBR/BPC Transcription factor family AT2G35550 52.9 6.0e-38 154.5
Bpe12g00098 . 166 272 BBR/BPC Transcription factor family AT2G35550 57.9 6.7e-37 151.0
Bpe10g00970 . 1 280 BBR/BPC Transcription factor family AT1G68120 51.7 6.9e-73 270.8
Bpe11g00306 . 102 222 BBR/BPC Transcription factor family AT1G68120 50.8 2.7e-37 152.5
Bpe05g00134 BCT 227 336 BBR/BPC Transcription factor family AT1G68120 56.4 3.6e-37 152.1
Bpe02g01724 BCT 227 336 BBR/BPC Transcription factor family AT1G68120 55.5 1.4e-36 150.2
Bpe12g00098 . 1 272 BBR/BPC Transcription factor family AT2G21240 61.9 7.6e-65 244.2
Bpe02g01724 BCT 1 336 BBR/BPC Transcription factor family AT2G21240 50.6 5.1e-61 231.5
Bpe05g00134 BCT 1 336 BBR/BPC Transcription factor family AT2G21240 50.9 8.7e-61 230.7
Bpe12g00098 . 1 272 BBR/BPC Transcription factor family AT4G38910 59.9 1.2e-59 226.9
Bpe05g00134 BCT 88 336 BBR/BPC Transcription factor family AT5G42520 57.3 5.3e-76 281.2
Bpe02g01724 BCT 88 336 BBR/BPC Transcription factor family AT5G42520 57.7 2.9e-74 275.4
Bpe11g00306 . 104 222 BBR/BPC Transcription factor family AT2G35550 73.9 9.6e-52 200.3
Bpe10g00970 . 159 280 BBR/BPC Transcription factor family AT2G35550 57.4 3.4e-41 165.2
Bpe11g01624 . 161 281 BBR/BPC Transcription factor family AT2G35550 57.9 7.6e-41 164.1
Bpe11g01623 CCT 147 267 BBR/BPC Transcription factor family AT2G35550 52.9 6.0e-38 154.5
Bpe12g00098 . 166 272 BBR/BPC Transcription factor family AT2G35550 57.9 6.7e-37 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006274 1 3 1 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22165 PF06217 GAGA_bind 2.30E-95 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00098 Bpe_Chr12 FPKM 16.954304 18.708773 9.020662 9.417199 10.341338 11.143573 12.39922 8.778838 8.124743 8.900835