Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00104 ATGGGTTTTCGTTTGCCGAGCATTCTGCATGCCGAGCAAGTCCTCAGTCTCGGATCTTTGTCGGTCCCGAAAGGCTACTGTGCGGTGTATGCAGGAGAGTGCCAAAAGAGGAGATTTGTGATCCCAATAACTTTCTTGAATCATCCTCGTTTTCAAGAATTATTGAGCGAAGCTGAAGAAGAATTCGGATTCCATCATCCAATGGGCGGCCTTCCTATTCCTTGCAAAGCCGAAATCTTCGTTGATCTCATCTCTCGTTTGGGCGAATCATTGTAG 276 46.74 MGFRLPSILHAEQVLSLGSLSVPKGYCAVYAGECQKRRFVIPITFLNHPRFQELLSEAEEEFGFHHPMGGLPIPCKAEIFVDLISRLGESL 91
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 756660 756935 + Bpe005344.1 Bpe12g00104 112117

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00104 91 Pfam Auxin responsive protein 19 87 IPR003676 GO:0009733
Bpe12g00104 91 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 13 87 IPR003676 GO:0009733
Bpe12g00104 91 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY 13 87 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00104 K14488 SAUR; SAUR family protein - tcc:18607662 125.561
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe12g00104 Bpe15g00833 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00226 Bpe-Chr10:8496721 Bpe12g00104 Bpe-Chr12:756660 1.50E-58 dispersed
Bpe10g00228 Bpe-Chr10:8514307 Bpe12g00104 Bpe-Chr12:756660 9.49E-48 dispersed
Bpe12g00104 Bpe-Chr12:756660 Bpe15g00832 Bpe-Chr15:18366101 5.02E-26 dispersed
Bpe12g00103 Bpe-Chr12:744654 Bpe12g00104 Bpe-Chr12:756660 6.36E-26 tandem
Bpe12g00104 Bpe-Chr12:756660 Bpe12g00105 Bpe-Chr12:766624 3.97E-25 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g81 . . . . . Bpe12g00104 . . Cmo19g00728 Cmo11g01713 . . . . . . . . . . . . . . Cla02g00458 Cam02g0466 Cec02g0465 . Clacu02g0468 Cmu02g0462 Cre02g0796 . . . . . Csa07g00063 . . . . Bda15g01052 . Bpe15g00833 . . . Sed01g0247 . . Cma11g01407 Cma19g00717 . . . . Bhi10g01907 Tan05g1206 Cmetu11g0253 . . . . . . . . . . . Lsi11g01166 Csa02g01342 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000045 7 14 1 1 5 16 0 0 13 4 12 13 24 19 19 31 17 1 0 16 18 3 0 3 14 20 13 24 12 19 339
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00104 Bpe_Chr12 FPKM 271.837311 278.762512 90.141518 82.747955 76.810059 94.172951 79.275902 105.674637 111.629898 106.121056