Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00109 ACAGCTATGCAGACCGAAGCACTTCCTTTGGTGAACAAGTTCCAGCTCGCCGAGGACGTTAATTCGGTGTTTCCGAAAGGAGTTCCTTGGGTCCGGTATCAAGGAACCTACAAAGATCTGCACCTTGATTTGGTTTGGCCTGGAAAAGATGTAGCCTTGGGAGTTGATAGTGTGGGCACAGTTTCTGTGTCTCTTCTAGCCTTTGCTTCTATCCAAGCACTACAACCAGACTTAATAATAAATGCAGGAACTGCTGGTGGCTTCAAGGTAAAAGGTGCTTCCATAGGTGATGTGTATCTTGCTTCTGATTGTGCTTTCCATGATAGAAGGATACCTATACCAGTTTTTGATTTGTATGGAGTTGGTTTCCGGGAGGCACTCTCAACGCCAAATATCGTGAAAGAACTTAACTTAAAGGTTGGCAAGTTGTCCACAGGAGACTCTTTAGATATGTCTTCTCAAGATGAGGCGTCAATTGTAGCAAATGATGCCACAATCAAAGACATGGAGGGAGCAGCTGTTGCGTATGTGGCCGATCTCGTCAAAGTTCCTGCAATATTCATAAAAGCAGTAACTGACATAGTGGACGGAGAGAAGCCTACTGCAGAGGAGTTTTTGGATAATCTGGTGACGGTGGCTGCTGCACTGGATCAAGCAGTCACGCAAGTAATTGATTACATCAGTGGAAAGCAATTGAGAAACATGGGGAATGGAGATTTTGGTGGAGGAGGAGGTTGCAGTAGGAAAGCTAGCTCTGGTAAAGCAACCATTCTGGCTCTTGGCAAGGCTTTTCCCCACCAGCTTGTCATGCAGGAGTACCTCGTTGATGGCTACTTCAAAAACACCAACTGCGATGATCCTGACCTCAGGCAGAAGCTCACTCGACTCTGCAAAACGACAACAGTGAAAACCAGATACGTAGTCATGTCAGAGGAGATTCTAAAGCAATATCCAGAGCTCGCCATTGAAGGCCGATCAACAGTGAAGCAAAGGCTCGACATCTGCAATATCGCAGTCACGGAGATGGCCGTCGAAGCTTCAAAAGCTTGCATCAAGAACTGGGGAAGGCCAGTTTCAGAGATAACCCACTTAGTCTACGTCTCTTCCAGCGAACTCCGACTACCCGGCGGCGATCTCTATTTAGCCACTGGCCTCGGCCTTAGTCCCGATACTCAACGGGTAATGCTATACTTTATGGGGTGCTCCGGTGGAGTCGCCGGCCTCAGACTAGCAAAAGATATCGCCGAGAATAATCCCGGCAGTCGAGTTCTCCTCACCACATCCGAAACCACCGTTATAGGGTACAAACCGCCGAGTGCTCACCGGCCTTATGATCTCGTCGGAGTGGCCCTCTTCGGCGATGGTGCCGGAGCAATGGTGATCGGTTCGGACCCGGTAGTAAATATCGAGCGTCCTCTTTTTGAACTTCACACCGCGATTCAGCAGTTCTTGCCGAACACGGAGAAAATTATAGACGGCCGACTGACGGAAGAGGGAATTAGTTTCAAGCTAGATAAGGAGCTTCCCCACATCATAGAAGACAACATCGAAAAATTCTGTGAGAACTTAATGGGAGTGGTCGGGTTCAACGGAAAGGAATATAACGAGCTATTTTGGGCGGTCCATCCTGGCGGGCCGGCGATATTGAACAGATTGGAAAAGCGGCTGGATCTGTCGCCGGAAAAGCTGAACGCGAGTCGGCGTGCACTGATGGACTACGGGAATGCGAGCAGCAATACGATTGTGTATGTGCTGGAGTACATGATAGAAGAGAGCTTGAAGATGAAGAAGGAAGGAGATGAAAATGGCGAGTGGGGATTAATTCTGGCTTTTGGACCTGGGATTTCCTTCGAGGGAATTCTGGCCAGAAACTTGGCCGTCTGTTTGTAA 1890 48.52 TAMQTEALPLVNKFQLAEDVNSVFPKGVPWVRYQGTYKDLHLDLVWPGKDVALGVDSVGTVSVSLLAFASIQALQPDLIINAGTAGGFKVKGASIGDVYLASDCAFHDRRIPIPVFDLYGVGFREALSTPNIVKELNLKVGKLSTGDSLDMSSQDEASIVANDATIKDMEGAAVAYVADLVKVPAIFIKAVTDIVDGEKPTAEEFLDNLVTVAAALDQAVTQVIDYISGKQLRNMGNGDFGGGGGCSRKASSGKATILALGKAFPHQLVMQEYLVDGYFKNTNCDDPDLRQKLTRLCKTTTVKTRYVVMSEEILKQYPELAIEGRSTVKQRLDICNIAVTEMAVEASKACIKNWGRPVSEITHLVYVSSSELRLPGGDLYLATGLGLSPDTQRVMLYFMGCSGGVAGLRLAKDIAENNPGSRVLLTTSETTVIGYKPPSAHRPYDLVGVALFGDGAGAMVIGSDPVVNIERPLFELHTAIQQFLPNTEKIIDGRLTEEGISFKLDKELPHIIEDNIEKFCENLMGVVGFNGKEYNELFWAVHPGGPAILNRLEKRLDLSPEKLNASRRALMDYGNASSNTIVYVLEYMIEESLKMKKEGDENGEWGLILAFGPGISFEGILARNLAVCL 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 778428 783316 + Bpe005349.1 Bpe12g00109 112122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00109 629 SUPERFAMILY Thiolase-like 253 466 IPR016039 GO:0016746
Bpe12g00109 629 CDD MTAN 1 223 - -
Bpe12g00109 629 CDD CHS_like 255 621 - -
Bpe12g00109 629 Pfam Chalcone and stilbene synthases, N-terminal domain 248 465 IPR001099 -
Bpe12g00109 629 Gene3D - 473 624 IPR016039 GO:0016746
Bpe12g00109 629 Gene3D - 246 472 IPR016039 GO:0016746
Bpe12g00109 629 Pfam Phosphorylase superfamily 3 224 IPR000845 GO:0003824|GO:0009116
Bpe12g00109 629 SUPERFAMILY Thiolase-like 472 623 IPR016039 GO:0016746
Bpe12g00109 629 Pfam Chalcone and stilbene synthases, C-terminal domain 475 625 IPR012328 -
Bpe12g00109 629 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 250 626 IPR011141 GO:0009058|GO:0016747
Bpe12g00109 629 Gene3D Nucleoside phosphorylase domain 1 235 IPR035994 GO:0003824|GO:0009116
Bpe12g00109 629 SUPERFAMILY Purine and uridine phosphorylases 2 222 IPR035994 GO:0003824|GO:0009116
Bpe12g00109 629 PANTHER TYPE III POLYKETIDE SYNTHASE B 250 626 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00109 - - - tcc:18607619 664.455
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g01133 Bpe-Chr5:23642955 Bpe12g00109 Bpe-Chr12:778428 1.34E-96 dispersed
Bpe12g00109 Bpe-Chr12:778428 Bpe10g00937 Bpe-Chr10:14940854 3.13E-12 dispersed
Bpe12g00109 Bpe-Chr12:778428 Bpe08g00451 Bpe-Chr8:2854062 2.76E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g95 . . . . . Bpe12g00109 . . . Cmo11g01722 . . . . . Cpe04g00573 Cpe15g00577 . . . . . . . Cla02g00450 Cam02g0458 Cec02g0457 Cco02g0476 Clacu02g0459 Cmu02g0454 Cre02g0788 . . . . . . . . Blo04g00551 Blo13g00525 Bda15g01045 . . . . Bma08g00766 . . . Cma11g01399 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002086 1 1 2 2 1 2 2 2 2 2 2 2 4 2 2 4 2 4 3 2 2 2 2 2 2 2 2 2 2 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00109 Bpe_Chr12 FPKM 10.256014 11.028804 12.127312 13.902724 16.152512 15.55464 17.406843 29.121904 27.105576 26.930248