Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00110 ATGGGTCCATTATCACATGCGAGTCGCTCGAGTCTAGTGTCGGTCAAGTCTTCCATAAGATCACTATATAATTGGGTTGATCAGACTCCGTTTATATCACATCGGAGAAGCTTTTATAGCTTCAGCCATAGCTTTACCCTCTTCTTCATTCGCTTAACACGATTCCCCATGCAGAGACAGAATCTACTTCTGTGCGTCCTTTTATCTTTCCTCTTTGCAGCAGGTTTCTGCCATGCCAATGATAAGTCTGTCGAGGTTGTTGGGGTCGGAGAATGTGCAGACTGCGAAGAAAGTAATTTCGAGATGAGCCATGCATTTGCAGGGCTTCGAGTAACCATAGACTGCAAAACTAATGGAGATTTGCAGACGAGAGGATCGGGACAGCTCGATGCAGAAGGAAATTTCAGAGCGAGGCTGCCGGATGAGATAGTTGAAGATGGAAAACTGAAGGAAGAGTGTTATGCTAAGCTTCACAGCGCTGCAGCCAAGCCTTGTCCTACTCTGAATGACGTAGAATCCTCGAAAATAGTACTCAAAACAGATAAAAATGGTAAACAGACGTTGGGCCTTGTGGGGAAGATCAAATTTTCCCCCTCCACCTGTGCTTCGGCTTTCTTCTGGTTTTTCTTCCACCACCCGCCATTGCCGACCTTCTCTCCTTTTCCTGTAACTTACCCACCATTTACAGGCCACCCATTCTACAAACCACTCCCGCCTCCCGTTCCGGTCTACCAAGAGCCAGTTCTTCCTCCTCCGGCTCCGGCTCCTGTTTACCAAGAGCCAGTTCTTCCCCCTCCGGCTCCGGCTCCGGCTCCTGTTTACCAAGAGCCAGTTCTTCCCCCTCCGGCTCCGGCTCCTGTTTACCAAGAGCCCATTCTTCCCCCTCCGGCTCCTGTCTACCACCAGCCAGTTCTCCCCCCTCCGGTTTATCATGAGCCAATTCTTCCCCCTCCGATCCCTGTGTACCACAAACCAGGTCATCCTCCGGTATACAAAAAGCCCTATCTTCCTCCACACCCTCCAGTTTATTCAAAGCCTCCTTCTGCGCCAACGCCGGTGTACAAGAAGAAGAAGAAGCACGACTCAAAATGCAAAACTCCAGTCTACAAGCATCCAGTATACAAGAAGAAACCAACGTACTCTCCCCCAGTAGTTCCGGTTCCCGTTCCAGTTCCGGTTCCTGTTTACAAGCCGCCAACTCCGGGTCCAGTTTATACAAACCCACCGCATCCATTTTTCCACCCTCTTCCTCCTCACCCCATCTACGGAAGTGTCCCTCATCACCCCAAGTATGGAGTCTTTCCTCCTCTCCCACCTCACTCTTCCCACCCTTAA 1335 50.34 MGPLSHASRSSLVSVKSSIRSLYNWVDQTPFISHRRSFYSFSHSFTLFFIRLTRFPMQRQNLLLCVLLSFLFAAGFCHANDKSVEVVGVGECADCEESNFEMSHAFAGLRVTIDCKTNGDLQTRGSGQLDAEGNFRARLPDEIVEDGKLKEECYAKLHSAAAKPCPTLNDVESSKIVLKTDKNGKQTLGLVGKIKFSPSTCASAFFWFFFHHPPLPTFSPFPVTYPPFTGHPFYKPLPPPVPVYQEPVLPPPAPAPVYQEPVLPPPAPAPAPVYQEPVLPPPAPAPVYQEPILPPPAPVYHQPVLPPPVYHEPILPPPIPVYHKPGHPPVYKKPYLPPHPPVYSKPPSAPTPVYKKKKKHDSKCKTPVYKHPVYKKKPTYSPPVVPVPVPVPVPVYKPPTPGPVYTNPPHPFFHPLPPHPIYGSVPHHPKYGVFPPLPPHSSHP 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 796295 797718 + Bpe005350.1 Bpe12g00110 112123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00110 444 PRINTS Proline rich extensin signature 227 248 - -
Bpe12g00110 444 PRINTS Proline rich extensin signature 287 312 - -
Bpe12g00110 444 PRINTS Proline rich extensin signature 269 286 - -
Bpe12g00110 444 PRINTS Proline rich extensin signature 250 266 - -
Bpe12g00110 444 PRINTS Proline rich extensin signature 213 225 - -
Bpe12g00110 444 PANTHER PROLINE-RICH PROTEIN 2 55 280 - -
Bpe12g00110 444 PANTHER EXTENSIN, PROLINE-RICH PROTEIN 55 280 - -
Bpe12g00110 444 Pfam Pollen protein Ole e 1 like 86 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00110 - - - jre:109006570 245.743
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00486 Bpe-Chr7:8943556 Bpe12g00110 Bpe-Chr12:796295 3.71E-58 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g117 . . . . . Bpe12g00110 Bma05g00415 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00465 Csa07g00082 . . . Blo13g00524 . . . . . . . . . . . . . Cpe16g00299 Cpe05g01313 . . . . . . . Cla02g01128 Cam02g1203 Cec02g1206 Cco02g1256 Clacu02g1192 Cmu02g1154 Cre02g1464 . Csa02g01357 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001811 3 2 2 5 2 3 1 3 3 1 3 3 2 2 2 2 3 3 2 2 1 2 1 2 2 1 2 2 2 2 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00110 Bpe_Chr12 FPKM 18.585943 23.832691 2.911206 3.090573 2.607894 5.172324 4.497204 8.917039 8.606835 9.830119