Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00112 ATGGAAACTGGAGTTGAAATTGTCGATGGCATGCCTGAGGAAGAGACAGAGATTCTGAATGTTCCTGAGGAGAGGGTGGATGAGAGAGTAGTCTTTGAGGATGCAGTGAATGCAGAAGAGCATTTTCTGGAACAGAGGACGAAATCTGACTCCGCATACGGCGTTGTTCATGAAGTAGTAGAGGAGGAACCGGGACGTGATTCTGAAGCTGGCGTGGCTTTGGAGAGTCCGTATTTTTCTAATGCGGTTGATAAATTTCACGCAGTAATAGAAGCTTTGATTTTGGCAGGCGAAAATAAGGAGGAGGTCAATAATGAAGAGGAACCCACCTTAGTTGCCATGAAGGGGAAAGATGTGGATGGTGGAAGTTCTGTTTTAGTGCCCTCAGTGACTAGTATAGTTGATGAGGAAGGGCCCAAGAAGGACGAAAAGTCTGAGCTCAATGAGTCACACAATGGATTAGGCAGGAGCGAAGATCGGGGCAAAGAGTTTTCTCAAGCAGCTGCTAGGAATGAGAGTGAAGGTTTGGATGATGTGGATAAGATTGAGGATGTTAAACCTGGTGTAACGATTGAGGAGCCAGAAACTATGGATGAGACTTTAAATAGTATGAATACAGGCATTGAAGGGGAGGTCAGTCTTTGTACTAATCGAGTTATTAAGTCTAACAGTGAGATTATTGATCAAATTGATAATGTAAATGATGTCAGCAAAAACAAAGTGAATTTGGAACGCTATGAAGCACCAACGGCCGAGTTAAGAAGTGGAAAGAGTGGCCATCATCTAGAGCTTCTAGACAGTAAAAATGCAAAACTCAGTGTTAACTATAATCTTACTGACATTGATGCAAAATTCCCAGATAAAGAAAGAGAGGAACATGGAGATTCCATTGCCGGTTCTGGTTCAAGGTATGAAGGTGAAGATTTAAGTTTTGATTACAATGTCAAGGAAATTAACAATGATTCAGTTGTGGTGGATTCAGGGAATAATGGGCACACAAGTGACTCGAGAGTGGATTTAGAACATAATGAGGAAACGCTAGGAGAGAAAAATAGTTCAGCTGGTCTGCATAAAATTTTGAATGATTGGGAAGATGAGGTCCAAAACCGAACTCTATCTCCTGCGAAGGTAAAGGCCGAAAAGTTAGCTAAGATGCAGGATGATAAAACTGGTTTGATTGCAATGGATAACCAACTTGACAAATGTCAGCAACTTGATGATATTGGCATTGAGAAAGTTGAAAAGGCAGAGGGTAAGGTTCAGGAAGAAAATAAGGGCACTTGCCCAAATACAGATGCAGGAATCCAACCTTCATTTAATTTACCTTCATCATCTGAAAAGGTTCCAAATCCTGCCCCCTCTCCTGCTCATCCTACTGGCCTTGGGCGTGCTGCTCCATTATTAGAGCCCGCAACAAAGACTGCCCAGCAGCCTCGAGTAAATGGTACTGTTTCCCATATGCAGACTCAAAAAATTGAGGAATCTTCTAAAGTTGAGGCAGAGGAGAACGATGAGACTCGTGAAAAGCTCCAAATGATAAGGGTAAAATTTCTGCGTGTTGCATATAGGCTTGGTCAAACTCCACATAATGTCGTTGTAGCGCAAGTTTTATATCGTCTGGGTTTAGCCGAGCAATTGCGAGGAAGAAATGGAGGCCGAGTTGGTGCCTTCAGTTTTGATCGCGCCAGTGCCATGGCAGAGCAACTTGAGGCAGCTGGGCAAGAGCCACTTGATTTTTCTTGTACAATTATGGTTTTGGGAAAAACAGGCGTTGGCAAAAGTGCAACTATCAATTCCATTTTTGATGAAGTTAAGTTCAGCACAGATGCTTTTCAAATGGGTACCAAGAAAGTTCAGGATGTCGTGGGTACTGTGCAGGGTATTAAAGTGCGTGTTATTGACACACCAGGCCTTCTGTCCTCATGGTCTGATCAGCGCCAGAATGAAAAGATTCTCCTTTCTGTTGAACGCTTTATCAAGAAAACACCTCCGGATATTGTATTGTATCTTGAGAGGTTGGACGTGCAGAATAGGGATTTTAGTGACATGCCACTCTTGCAAACCATCACGGAAATATTTGGGCCGTCCATTTGGTTTAATGCAATCGTGGTTTTCACTCATTCAGCCTCAGCTCCACCTGATGGCCCAAATGGTACAGCTTCTAGCTATGACATGTTTGTTACTCAACGCTCTCATGTTGTCCAGCAAGCTATTCGTCAGGCAGCTGGGGATATGCGGCTCATGAACCCTGTGTCACTGGTGGAGAACCACTCTGCATGCAGAACAAACAGAGCTGGGCAAAGAGTTTTGCCAAATGGTCAGGTGTGGAAGCCCCATTTGTTGCTTCTGTCTTTTGCATCAAAGATTCTGGCCGAAGCAAATGCACTGTTGAAGCTTCAAGACGGTCCTCCTGGAAGGCCTTTCGTAGCTCGATCAAGGGCCCCTCCTTTACCTTTTCTGCTCTCATCCCTCCTTCAATCAAGACCATTGGTGAAACTTCCTGAGGAACTGTTTGTCGACGGGGATGATCTTGAGGATGAAATAGATGGAACCTCAGAGTCTGAAGACGAATCAGAATACGAGGAGTTGCCACCATTTAAACGATTGACGAAGGCTCAAGTTGCTAAACTTTCCAAGGCACAAAATAAGGCATATTTTGACGAATTAGAATATAGGGAAAAGCTATTTATGAAGAAACAACTGAAAGAAGAGAAATGTCGACGAAGAATGATGAAGAAAATGGCAGCTCAGATAAAGGATCTGCCAGCTGACTATGCTGAGCACATAGAAGAAGAAAGTAATGGTGCAGCCTCAGTACCAGTTCCCATGCCAGATTTAGCACTACCTGCTTCCTTTGATTCTGATAATCCTACTCATCGATATCGTCATCTTGATTCGTCTAACCAATGGCTGGTAAGGCCAGTACTAGAAACACATGGTTGGGATCATGATGTTGGTTATGAAGGTATAAATGTTGAAAAACTGTTCGTCTTTAAAGAAAAAATCCCCTTATCCTTTTCGGGTCAGGTTACCAAGGATAAGAAGGATGCTAATGTTCAGATGGAAATGACCAGTTCAATAAAGCATGGAGAAGGGAAAGTGACTTCTTTTGGTTTCGATATGCAGACTGTTGGGAAGGACTTGGCTTATACTTTACGTGGTGACAGAACATTTTGTAATTTTTGGAAGAATAAGGCTATTGCAGGTATTTCGGCCACTCTCTTGGGTGATACCTTGTCTGCTGGAGTGAAAGTAGAAAACAAATTGGTTGCCAGTAAAAGATTCAGATTGGTTATAACTGGAGGTGGAATGGCTAGTCAGGGAGATGTTGCTTATGGAGGCAGTCTTGAGGCCCAATTGAGGGAGGCAGATTATCCTTTGGGTCGATCACTATCAACTCTTGGGTTATCTGTTATGGATTGGCATGGAGATCTTGCCATTGGATGCAATATACAGTCTCAAATTCCTGTTGGACGATCAACAACTTTGATCGGTCGTGCCAATTTGAATAATAAAGGGGCAGGGCAAGTAAGCATGCGCTTAAACAGCTCAGAACAGCTTCAAATAGCATTAATTGGTCTTGTTCCTCTCGTGAAAAAGATTCTTGGTTATCCTCTGCAGTAG 3624 43.1 METGVEIVDGMPEEETEILNVPEERVDERVVFEDAVNAEEHFLEQRTKSDSAYGVVHEVVEEEPGRDSEAGVALESPYFSNAVDKFHAVIEALILAGENKEEVNNEEEPTLVAMKGKDVDGGSSVLVPSVTSIVDEEGPKKDEKSELNESHNGLGRSEDRGKEFSQAAARNESEGLDDVDKIEDVKPGVTIEEPETMDETLNSMNTGIEGEVSLCTNRVIKSNSEIIDQIDNVNDVSKNKVNLERYEAPTAELRSGKSGHHLELLDSKNAKLSVNYNLTDIDAKFPDKEREEHGDSIAGSGSRYEGEDLSFDYNVKEINNDSVVVDSGNNGHTSDSRVDLEHNEETLGEKNSSAGLHKILNDWEDEVQNRTLSPAKVKAEKLAKMQDDKTGLIAMDNQLDKCQQLDDIGIEKVEKAEGKVQEENKGTCPNTDAGIQPSFNLPSSSEKVPNPAPSPAHPTGLGRAAPLLEPATKTAQQPRVNGTVSHMQTQKIEESSKVEAEENDETREKLQMIRVKFLRVAYRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGAFSFDRASAMAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFSTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLSSWSDQRQNEKILLSVERFIKKTPPDIVLYLERLDVQNRDFSDMPLLQTITEIFGPSIWFNAIVVFTHSASAPPDGPNGTASSYDMFVTQRSHVVQQAIRQAAGDMRLMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANALLKLQDGPPGRPFVARSRAPPLPFLLSSLLQSRPLVKLPEELFVDGDDLEDEIDGTSESEDESEYEELPPFKRLTKAQVAKLSKAQNKAYFDELEYREKLFMKKQLKEEKCRRRMMKKMAAQIKDLPADYAEHIEEESNGAASVPVPMPDLALPASFDSDNPTHRYRHLDSSNQWLVRPVLETHGWDHDVGYEGINVEKLFVFKEKIPLSFSGQVTKDKKDANVQMEMTSSIKHGEGKVTSFGFDMQTVGKDLAYTLRGDRTFCNFWKNKAIAGISATLLGDTLSAGVKVENKLVASKRFRLVITGGGMASQGDVAYGGSLEAQLREADYPLGRSLSTLGLSVMDWHGDLAIGCNIQSQIPVGRSTTLIGRANLNNKGAGQVSMRLNSSEQLQIALIGLVPLVKKILGYPLQ 1207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 805137 808760 - Bpe005352.1 Bpe12g00112 112125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00112 1207 Pfam Translocase of chloroplast 159/132, membrane anchor domain 939 1202 IPR024283 -
Bpe12g00112 1207 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 413 1205 IPR045058 -
Bpe12g00112 1207 TIGRFAM 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains 458 1203 IPR005690 GO:0003924|GO:0005525|GO:0009707|GO:0045036
Bpe12g00112 1207 ProSiteProfiles AIG1-type G domain profile. 578 807 IPR006703 GO:0005525
Bpe12g00112 1207 MobiDBLite consensus disorder prediction 844 860 - -
Bpe12g00112 1207 MobiDBLite consensus disorder prediction 844 863 - -
Bpe12g00112 1207 MobiDBLite consensus disorder prediction 416 503 - -
Bpe12g00112 1207 MobiDBLite consensus disorder prediction 424 447 - -
Bpe12g00112 1207 CDD Toc34_like 553 798 - -
Bpe12g00112 1207 MobiDBLite consensus disorder prediction 129 176 - -
Bpe12g00112 1207 MobiDBLite consensus disorder prediction 135 176 - -
Bpe12g00112 1207 MobiDBLite consensus disorder prediction 474 491 - -
Bpe12g00112 1207 Pfam AIG1 family 581 714 IPR006703 GO:0005525
Bpe12g00112 1207 Gene3D - 550 798 IPR027417 -
Bpe12g00112 1207 PANTHER TRANSLOCASE OF CHLOROPLAST 120, CHLOROPLASTIC-LIKE 413 1205 - -
Bpe12g00112 1207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 574 715 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00112 - - - cmo:103490300 1326.23
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe12g00112 Bpe15g00822 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00713 Bpe-Chr1:5394727 Bpe12g00112 Bpe-Chr12:805137 1.19E-32 dispersed
Bpe06g00518 Bpe-Chr6:16322066 Bpe12g00112 Bpe-Chr12:805137 0 dispersed
Bpe08g00709 Bpe-Chr8:8363230 Bpe12g00112 Bpe-Chr12:805137 9.33E-36 dispersed
Bpe10g00456 Bpe-Chr10:11897016 Bpe12g00112 Bpe-Chr12:805137 0 dispersed
Bpe13g01147 Bpe-Chr13:16945398 Bpe12g00112 Bpe-Chr12:805137 8.39E-170 transposed
Bpe12g00112 Bpe-Chr12:805137 Bpe15g00822 Bpe-Chr15:18328173 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g129 . . . . . Bpe12g00112 . . Cmo19g00737 . . . . . Sed08g0469 . Cpe15g00583 Bhi05g01734 Tan02g0702 Cmetu06g1183 . Hepe02g0438 . . Cla02g00439 Cam02g0448 Cec02g0446 Cco02g0466 Clacu02g0450 Cmu02g0444 Cre02g0778 Cone2ag0203 Cone16ag0840 . . . Csa07g00087 . Cme01g01277 Blo04g00558 Blo13g00521 . Bda14g00607 Bpe15g00822 . Bma03g00599 Bma08g00616 . . . Cma11g01385 Cma19g00728 . Car19g00558 . . . . . . . . . . . . . . . . Lsi11g01187 . Chy01g00691 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005811 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00112 Bpe_Chr12 FPKM 5.030921 5.317379 7.889141 7.521467 19.946016 22.388737 21.561384 11.682517 13.859393 15.127887