Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00113 ATGGTGTTCCTCTGCAATGCCCCGAAAATCTCCCCCGCATTTCGTATACGGCCTAACAGACGCAAACTTTCCAAGCTCCCCTGTGTGGGGAGGGCCCTCGTCAACCTCGCTTCCAGAGGTGATCTCTCAAGGGCTCTCTCTCATCTGGACTTATTAGCGAGCAAAGGTATTCGGTTGCCCTTTCGAGTGATTGCTCAACTCTTGCAACGCTGCGGCGACTCGAGATCTCTTAGAGAAGGAACATGGATTCACCTTCATCTGAAACTTACAGGGTTCAAACACCCCTCAATTTTTATATCCAACCATTTGATTAATATGTATTTTAGTTGCGGAAACGACGCTGAGGCACGCAAGGTGTACGATAAAATGGCTGCTAAAAACTTGTACTCTTGGAACAATATGCTTTCTGGTTATGCGAAATTGGGGAGAATAAAACCAGCTAGGAAGTTATTTGATCAAATGCCAGAAAAGGACGTTGTTTCGTGGAATACGATGGTGATTGCCCATGCAAAGATGGGGCACTATCACGAGGCTTTAAGACTTTATAGCGAATTTCGAAGAAAATCAATTGGGTTTAATGCATTCAGTTTTGCTGGTGTTTTAACTCTTTGTGTAAAGTTCAAGGATTTGCAGCTTACTAGACAAGTTCATGGGCAGGTATTGGTTGCTGGTTTCCGGTCTAATGTAGTGCTTTTGAGTTCAATTCTCGATGCTTATGCCAAATGCGAGGAGATGGAAGAGGCAAAGAGATTATTTGAAAAAATGCCTGTGAGGGACGTCCTTGCTTGGACCACCATGGTATCTGCCTATGCTAAATTTGGTGATATGGAATCTGCTAGTAAATTGTTCGATCGAATGCCTGAAAGGAACTCTGTCTCATGGACAGCTTTGATAGCAGGCTATGCTAGAAACTGTTTGGGTCATGAAGCCCTCGAATTGTTTAAGGAAATGATGATTTTACGGATCAGACCTGACCAATATACATTCAGTAGTTGCCTCTGTGCTTGTGCAACAATATCTGCACTGAAGCATGGAAAACAAATCCATGGATATTTGACGAGAACTAACTTTAACTCCAACACAATAGTTGTTAGCTCTCTAATTGACATGTATTCAAAATGTGGGAGTGTAGAAGCTGGCTGGCGAGTTTTCAGTCTCACCAGCTGCACGCACGATTCTGTTCTATGGAATACGATGATGTCTGCTCTAGCGCAGCATGGCCAAGGTAAAAGCACTATTCAGCTGTTCAATAAGATGGTGAAATCAGGGGTGAAGCCTGACAGAATCACCTTCATCGTAATTCTTAGTGGGTGTAGTCATGCAGGGATTGTACAAGATGGTCTAATGTTTTTCAGATCAATGGGTAGCAATCTTGGCGTTCTTCCAGATCAAGAACATTATGCTTGCTTGATTGACCTTTTGGGTCGAGGTGGATATTTCATAGAACTGATGAATCAGCTGGAGAGGATGTCATGTAAGCCTGATGATAGTGTGCGCAATGCCTTACTGGGAGTCTGTGGAATTCACGGGAATATCGAGCTGGGAAAGAAAGTGGCCGAACACATCATTAATCTGCAGCCGGAATCCTCCTCAGCTTATGTGTTACTCGCTGGTATGTACGCTACTCACGGGCAGTGGGAGTTAATGGAGAAAGTAAGAGAAGTCATGAATGATAGATATGTGAAAAAAGAGCGTGCTATTAGTTGGATAGAAATTGAAAATAAAGTACATTCTTTCATTGTTTCGGATAGACTGCACCCATTGAAAGAAGATATATACAATATTTTGAATCAGATCGCTGGGCATATGGAACAGAATGCCTCAATCGCCTACTGA 1836 42.97 MVFLCNAPKISPAFRIRPNRRKLSKLPCVGRALVNLASRGDLSRALSHLDLLASKGIRLPFRVIAQLLQRCGDSRSLREGTWIHLHLKLTGFKHPSIFISNHLINMYFSCGNDAEARKVYDKMAAKNLYSWNNMLSGYAKLGRIKPARKLFDQMPEKDVVSWNTMVIAHAKMGHYHEALRLYSEFRRKSIGFNAFSFAGVLTLCVKFKDLQLTRQVHGQVLVAGFRSNVVLLSSILDAYAKCEEMEEAKRLFEKMPVRDVLAWTTMVSAYAKFGDMESASKLFDRMPERNSVSWTALIAGYARNCLGHEALELFKEMMILRIRPDQYTFSSCLCACATISALKHGKQIHGYLTRTNFNSNTIVVSSLIDMYSKCGSVEAGWRVFSLTSCTHDSVLWNTMMSALAQHGQGKSTIQLFNKMVKSGVKPDRITFIVILSGCSHAGIVQDGLMFFRSMGSNLGVLPDQEHYACLIDLLGRGGYFIELMNQLERMSCKPDDSVRNALLGVCGIHGNIELGKKVAEHIINLQPESSSAYVLLAGMYATHGQWELMEKVREVMNDRYVKKERAISWIEIENKVHSFIVSDRLHPLKEDIYNILNQIAGHMEQNASIAY 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 811053 812888 + Bpe005353.1 Bpe12g00113 112126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00113 611 Gene3D Tetratricopeptide repeat domain 343 445 IPR011990 GO:0005515
Bpe12g00113 611 Gene3D Tetratricopeptide repeat domain 193 342 IPR011990 GO:0005515
Bpe12g00113 611 PANTHER - 35 286 - -
Bpe12g00113 611 PANTHER - 290 605 - -
Bpe12g00113 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 293 IPR002885 -
Bpe12g00113 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Bpe12g00113 611 PANTHER - 264 337 - -
Bpe12g00113 611 TIGRFAM PPR: pentatricopeptide repeat domain 262 290 IPR002885 -
Bpe12g00113 611 TIGRFAM PPR: pentatricopeptide repeat domain 292 325 IPR002885 -
Bpe12g00113 611 TIGRFAM PPR: pentatricopeptide repeat domain 394 427 IPR002885 -
Bpe12g00113 611 TIGRFAM PPR: pentatricopeptide repeat domain 129 160 IPR002885 -
Bpe12g00113 611 TIGRFAM PPR: pentatricopeptide repeat domain 160 190 IPR002885 -
Bpe12g00113 611 TIGRFAM PPR: pentatricopeptide repeat domain 233 259 IPR002885 -
Bpe12g00113 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Bpe12g00113 611 Gene3D Tetratricopeptide repeat domain 29 175 IPR011990 GO:0005515
Bpe12g00113 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 258 IPR002885 -
Bpe12g00113 611 PANTHER BNACNNG07920D PROTEIN 264 337 - -
Bpe12g00113 611 Pfam PPR repeat 364 385 IPR002885 -
Bpe12g00113 611 Pfam PPR repeat 233 258 IPR002885 -
Bpe12g00113 611 Pfam PPR repeat 101 127 IPR002885 -
Bpe12g00113 611 Pfam PPR repeat family 392 439 IPR002885 -
Bpe12g00113 611 Pfam PPR repeat family 290 337 IPR002885 -
Bpe12g00113 611 Pfam PPR repeat family 157 204 IPR002885 -
Bpe12g00113 611 Gene3D Tetratricopeptide repeat domain 446 588 IPR011990 GO:0005515
Bpe12g00113 611 PANTHER BNACNNG07920D PROTEIN 35 286 - -
Bpe12g00113 611 PANTHER BNACNNG07920D PROTEIN 290 605 - -
Bpe12g00113 611 SUPERFAMILY TPR-like 105 290 IPR011990 GO:0005515
Bpe12g00113 611 Pfam E motif 509 571 IPR046848 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00113 - - - qsu:112017763 838.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00113 Bpe-Chr12:811053 Bpe12g00701 Bpe-Chr12:12563673 5.93E-29 dispersed
Bpe12g00113 Bpe-Chr12:811053 Bpe05g00127 Bpe-Chr5:2842824 9.90E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g130 . . . . . Bpe12g00113 . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1222 Cone8ag1274 . . . . . . . Blo13g00520 Bda15g01042 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008158 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00113 Bpe_Chr12 FPKM 18.158689 18.645222 24.440702 25.812468 8.914803 8.288749 7.706075 71.296631 68.221199 62.238789