Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00115 ATGTCTTCTCCTTTGCACTCCGCGTTTCTTCAGCTTCCCATCCAGCCTGCTTCTTCTAAGATATCGGCGAGTAAGCCTCTCTGCGTAGGATTTCGTAAAAGAAGCTCAATTGTTTCTGCCGTTTCTGGGACGGAGACGAAGAGGACGGACGGTTTTGGCTTTCGAATCCAAATGGGTAGTTCCTCTTTGTCGTTGTATGAAGTTCTGGGTATTCCTGCGAGTGCGAGTTGCTGCGAAATCAAATCGGCTTACCGGAGATTAGCTAGAACGTGTCACCCTGACGCCGTCGCTTTGAACCGGAAGGAAACGTCGGCAAATGAGTTTATGAAAATTCACGCAGCTTATTCAACATTATCAGATCCAGCCAAAAGAGCAACTTACGATTTAGGCCTTTTCCGACATCGGACCCCCTTCGATTCGTCAGTAAAAATGGCATTTCGCTCATCGCCGGCGACTGGTTTTTCCGGTCATACCTGCAGGAATTGGGAAACAGATCAATGTTGGTAG 507 47.93 MSSPLHSAFLQLPIQPASSKISASKPLCVGFRKRSSIVSAVSGTETKRTDGFGFRIQMGSSSLSLYEVLGIPASASCCEIKSAYRRLARTCHPDAVALNRKETSANEFMKIHAAYSTLSDPAKRATYDLGLFRHRTPFDSSVKMAFRSSPATGFSGHTCRNWETDQCW 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 826960 827466 + Bpe005355.1 Bpe12g00115 112128

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00115 168 CDD DnaJ 66 120 IPR001623 -
Bpe12g00115 168 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 29 168 - -
Bpe12g00115 168 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Bpe12g00115 168 PRINTS DnaJ domain signature 84 99 IPR001623 -
Bpe12g00115 168 PRINTS DnaJ domain signature 66 84 IPR001623 -
Bpe12g00115 168 PRINTS DnaJ domain signature 103 123 IPR001623 -
Bpe12g00115 168 PANTHER - 29 168 - -
Bpe12g00115 168 ProSiteProfiles dnaJ domain profile. 64 131 IPR001623 -
Bpe12g00115 168 SMART dnaj_3 63 123 IPR001623 -
Bpe12g00115 168 SUPERFAMILY Chaperone J-domain 58 131 IPR036869 -
Bpe12g00115 168 Pfam DnaJ domain 65 128 IPR001623 -
Bpe12g00115 168 Gene3D DnaJ domain 55 151 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00115 - - - tss:122661091 160.229
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe12g00115 Bpe15g00820 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00157 Bpe-Chr10:3733929 Bpe12g00115 Bpe-Chr12:826960 4.80E-38 dispersed
Bpe12g00115 Bpe-Chr12:826960 Bpe13g00869 Bpe-Chr13:14859776 2.03E-16 dispersed
Bpe11g00970 Bpe-Chr11:7217288 Bpe12g00115 Bpe-Chr12:826960 7.43E-47 transposed
Bpe12g00115 Bpe-Chr12:826960 Bpe15g00820 Bpe-Chr15:18320877 1.10E-61 wgd
Bpe12g00115 Bpe-Chr12:826960 Bpe02g01729 Bpe-Chr2:19739495 1.69E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g133 . . . . . Bpe12g00115 . . . . . . . Car20g00667 . . . . . . . . . . . . . . . . . Cone8ag0852 . . Cone9ag1605 . . Chy11g00279 . Blo04g00560 Blo13g00517 Bda15g01040 Bda14g00609 Bpe15g00820 . Bma03g00601 Bma08g00760 . . . . . . . Cpe16g00304 . . . . . . . . Cla02g01148 Cam02g1225 Cec02g1232 Cco02g1274 Clacu02g1205 Cmu02g1174 Cre02g1483 . Csa02g01369 . Cme11g00399
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001923 4 1 3 3 4 1 3 2 1 2 2 2 2 2 2 2 1 3 3 2 2 2 2 2 2 2 2 4 2 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00115 Bpe_Chr12 FPKM 12.336478 14.201593 13.345698 14.928156 11.08637 12.964003 12.288244 22.163843 23.177181 22.60364