Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00120 AATTGGATCAGATACTGTGTGATCGCCGCTCGGTGGCGAGCGTCTTGGAGATTCAAGGGGTCATTGCAGGCTCTAAAGAAGATATCGCAGGAACACCCAACTGCCTGTCTGCGAGCTGGTGCTCTAATGGCTGTGCTTTCTTATCTGGATTTCTTCTCCACAGGAGTTCAGAGAGTAGCATTATCTACTGCTGCAAACATGTGTAAAAAGCTTTCTTCAGATGCAGCTGACTTTGTTATGGGAGCTGTGTTGGAGCATGCTTCAGTTTGCTTGACTCGGATTGCCGAAGCATTTGCATCATCTCCTGATAAATTAGATGAATTGTGTAATCATGGACTAGTGGCTCAAGCTGCCTCACTCATATCTGCCAGCAATTCTGGAGGTGGTCAGGCATCGCTCAGCATACCTACTTATACGGGATTAATTAGACTTCTTTCCACCTGTGCAAGTGGGTCCCCATTAGGGACTAAAACGCTTCTTCTTCTTGGCATCAGTGGTATTCTCAAAGATATTCTTTCTGGTTCTGGCACAGCTGCAAATGCTGTTTCACCTGCTTTAAGTAGACCGCCAGAGCAGATTTTTGAAATTGTCAATCTAGCAAATGAGCTTCTACCACCACTACCCCAAGGAACCATATCCCTTCCTGCCAGTTTCTTGTTTGTGAAAGGATCTGCTATGAAAAAGTCTTCTGCTAGTGGTTCCGGAAAACAAGAAGAAACAAATTGTTCAAATCCTGAGGTCTCAGCTCGTGAGAAACTCTTAAATGATCAACCTGAGATTCTTCAGCAATTTGGAATGGACCTTCTTCCAATTTTAATACAGATCTACGGGTCAAGTGTTAATGGTCCTGTTCGGCACAAATGTCTCTCCATTATTGGGAAATTGATGTACTTCAGTTCTTCAGAGATGATCCAGTCTCTATTAAATGTAGCAAATATATCAAGTTTCTTAGCTGGTGTTTTAGCATGGAAAGATCCTCATGTCTTGATTCCTGCTCTTCAAATTGCTGAAATTCTTATGGAAAAGCTTCCAGAAACTTTTGCAAAGATGTTTGTTAGAGAAGGCGTGGTCCATGCGGTGGACCAACTTGTCTTAGTCAATAACCAAAATAACACTCCTACCCAAGTGTCCTCGACCGAGAAAGATAATGATCCTGGAACTGGAACATCATCTCGTACTCGGCGTTATAGGCGTCGTAACAATAATGCAAATCCAGATGTAAGTACATTGGATGAGTCTAAGAATAGTTCTGGAAATGTTGGTTCACCTCCAAGCTCGGTAGAAGTTCCATCTATTAATTCCAATATTCGGTTGGCGGTTAGTGGTTGTGCTATCGCATTCAAGGACAAGTATTTCCCTTCAGATCCTGGAGCTACTGAAGTTGGAGGAACTGACGATCTTTTGCATTTGAAGAATCTTTGCAGGAAGCTGAATTTAGGTATTGATGACCAACGTGCAAAAGCAACCGGGAAGTCAAAAGCCTCCGAGTCTCACTTGGTTGATAACTCTGCGAATAAGGAAGAATACCTATCTCGTGTTATATCAGAGATGCTAGTTGAATTTGGCAAAGGGGATGGTGTATCCACTTTCGAGTTTATTGGAAGTGGTGTTGTTGCAGCTTTGCTGAATTATTTTTCTTGTGGATACTTTTTGAAGGAGAAAATTTCAGATGCTAATCTGCCAAAGCTTCGTCAGCAGGCACTTAAAAGATTCAAATCATTTGTTGCTGTAGCACTTCCTTCCAATGCTTCTGAGGGTACTTTGGCTCCTATGGCTGTTTTGGTTCAGAAACTTCAAAATGCTTTATGTTCCTTGGAGCGTTTCCCGGTTGTCTTAAGGCAATCATCTAGGTCATCTAGTGGAAGTGGTCGCCTTTCCTCTGGATTAAGTGCATTATCTCAGCCTTTTAAGTTGCGTCTCTGTCGAGCTCATGGAGAGAAAAATCTCCGTGATTATTCTTCAAATGTGGTGCTCATTGATCCCTTAGCAAGTTTAGCAGCAGTTGAAGAGTTTCTTTGGCCTCGAGTACAGCGAGGTGATGCTGGTCAAGAGTCTGCATTATCTACTGGAAATTCAGAGTTGGGGACCACTTCTGCTGTGGCTGGGGCTTCATCTCCATCCACAACCACTCCTGCTTCAACAACTCGTCGTCACTCTACTAGGTCTAGATCCTCAGTGAACGTAGGAGATGGAGCTAAGAAGGAATTATCTGAAGAGAAAAGCACTAGTTCATCTAAAGGAAAAGGTAAGGCTGTTATGAAGCCTGCTCAGGAGGAAGCAAGAGGGCCTCAAACTAGGAATTCTTCTCGTAGAAAAGCAGCTATAGACAAGGATGCTCTGAAACCTGTTAATGGGGAGACTTCGTCTGAGGACGATGAATTGGATGCATCTTTTGTTGAGATTGATGATGCATTAGTTATTGAAGATGATGATATGTCAGACGAAGAAGAAGATGATGATCACGATGAGGTCCTAAGAGCCGAGTCCCTTCCCGTTTGTATACCTGAAAGAGTACATGATGTTAAGTTGGGCGATGCAGCTGAGGAAAGTAACGTTGCTCCAGTAGCTGTGGATAGCCAGGTCAATCCTGCTTCCGGTTCAAGTAGCAGAATTGCTGCTGTTAGGGGCTCAGATTCTAATGATCATAGGAGTAGCAATTCTTATGGTTCACGGGGTGCAATGTCATTTGCCGCCGCTGCTATGGCTGGGCTTCGATCTGCTAATGGTAGAGGTTTTAGAGGAGGTCGAGACAGGCATGGTCGTCCTCTCTTTGGTAGCTCTAGTGATCCACCAAAGTTGGTCTTTACTTCTGGTGGGAAGCAACTTAATAGGCATTTAACCATTTACCAGGCTATCCAGAGACAACTTGTTTTGGATGAGGATGACGATGAGAGATATGCTGGTAGTGATTTCTTGTCTAGTGATGGAAGTAGGCTATGGAGTGACATATATACTATTACATATCATAGAGCTGAAAATCAAGCTGATAGAACGTCTGCTGGGGGATCCAATACTTCTACCGCATCAAAATCTACCAAATCTGGATCTGCTTCCAATTCTAACTCTAATTTGCAGAGGGTGTCTCTTCTGGATAGCATTTTGCAGGCAGAGCTTCCTTGTGATATGGAAAAGTCTAATCCTACTCATAGTATTTTGGCATTGTTGCGTGTTTTAGACACTTTGAACCAACTTGCACCCCGTTTGAGAGCGCAGATAGTTTCTGATCGTTTTGCAGAGGGTAAACTCTTCAGTCTTGATGAGCTAAGTGTTGCTGGTGCAAGGGTCCTTCCTGAGGAGTTCATTAATAGCAAGCTTACTCCTAAATTAGCTCGACAAATTCAAGATGTCCTTGCATTATGCAGCGGAAGTCTCCCTTCATGGTGTTATCAGTTGACGAAAGCTTGTCCATTCTTGTTTCCTTTTGAAACCCGGCGACAGTATTTCTATTCAACTGCTTTTGGGTTATCACGTGCATTGTATCGCCTTCAGCAGCAGCATGGTGCTGATGGTCTTGGAATGGGAAGTGAAAGAGAGGTGAGGGTTGGGAGGTTACAGCGCCAAAAAGTTCGTGTATCTAGAAACCGTATTTTAGATTCTGCTGTGCAAGTAATGGAAATGTATTCTAGTCAAAAGGTAATGCTGGAAGTAGAGTATTTTGGTGAAGTTGGAACTGGGTTGGGTCCTACACTTGAGTTTTATACACTTATAAGTCATGACCTACAAAAAGCTAGTCTTGGAATGTGGAGATCAAATTCCTCATCTGATAGATCTATGGAAATTGATGGGGATGAACTGAAAGATGAAAAAATCAACTCTGCTGGATTTGGTTCCATGGTAACCAATTCAGACTCCATACATGCTCCACTTGGATTGTTCCCTCGCCCCTGGTCTCCAAATTCTGATGTTTCAAATGGTAGCCAATTTTCTAAAGTAATAGAGTATTTCCGATTAGTTGGTCGTGTGATGGCCAAAGCACTTCAGGATGGGCGATTATTGGACCTGCCACTGTCAACAGCATTCTATAAGCTGGTGCTTGGTCAAGAGCTTGATTTGCATGATATTCTTTCCTTCGATACTGAATTTGGCAAGATTTTGCGAGAGTTGCATGTACTTGTTTGTCGGAAACAATACCTAGAATCAACAGGTGGTGATAATCATGAAGCAATCGTCAACTTGAGTTTTCGTGGGACTTCAATTGAGGACCTGTACTTGGATTTTTCGCTTCCTGGTTACCCAGATTACATGTTGAAGCAGGGAGATGAAAATGTCAATATCAACAACCTGGAGGAGTACGTGTCCTTGGTAGTTGATGCAACTGTCAAGACTGGAATCATGCGGCAAATTGAAGCATTTAGAGAAGGGTTTAACCAGGTCTTTGACATCACTTCTTTGCAAGTATTTACTCCAAATGAGCTAGATCATTTGCTTTGTGGTCGGCGAGAGTTATGGGAGGCTGACTCCCTTGCTGATCACATAAAATTTGATCATGGCTACACTGCAAAGAGCCCTGCCATAGTAAATTTACTCGAGATCATGGGAGAGTTCACTCCTGAGCAGCAGCGAGCCTTTTGCCAGTTTGTTACTGGTGCACCTCGGCTTCCTCCTGGCGGGTTGGCTGTTCTGAACCCAAAACTTACAATCGTGAGAAAGCAATCTTCAACAGCTACCAATGTTCCAACTAATGGAACTGGGTTGTCCGAATCAGCAAATGATGACTTGCCGAGTGTTATGACTTGTGCGAATTACCTGAAGCTTCCTCCTTATTCAACTAAGGAAATTATGTTCAAAAAATTAATCTACGCGATCAGTGAAGGGCAGGGATCTTTTGATCTCTCGTGA 4839 43.15 NWIRYCVIAARWRASWRFKGSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLSSDAADFVMGAVLEHASVCLTRIAEAFASSPDKLDELCNHGLVAQAASLISASNSGGGQASLSIPTYTGLIRLLSTCASGSPLGTKTLLLLGISGILKDILSGSGTAANAVSPALSRPPEQIFEIVNLANELLPPLPQGTISLPASFLFVKGSAMKKSSASGSGKQEETNCSNPEVSAREKLLNDQPEILQQFGMDLLPILIQIYGSSVNGPVRHKCLSIIGKLMYFSSSEMIQSLLNVANISSFLAGVLAWKDPHVLIPALQIAEILMEKLPETFAKMFVREGVVHAVDQLVLVNNQNNTPTQVSSTEKDNDPGTGTSSRTRRYRRRNNNANPDVSTLDESKNSSGNVGSPPSSVEVPSINSNIRLAVSGCAIAFKDKYFPSDPGATEVGGTDDLLHLKNLCRKLNLGIDDQRAKATGKSKASESHLVDNSANKEEYLSRVISEMLVEFGKGDGVSTFEFIGSGVVAALLNYFSCGYFLKEKISDANLPKLRQQALKRFKSFVAVALPSNASEGTLAPMAVLVQKLQNALCSLERFPVVLRQSSRSSSGSGRLSSGLSALSQPFKLRLCRAHGEKNLRDYSSNVVLIDPLASLAAVEEFLWPRVQRGDAGQESALSTGNSELGTTSAVAGASSPSTTTPASTTRRHSTRSRSSVNVGDGAKKELSEEKSTSSSKGKGKAVMKPAQEEARGPQTRNSSRRKAAIDKDALKPVNGETSSEDDELDASFVEIDDALVIEDDDMSDEEEDDDHDEVLRAESLPVCIPERVHDVKLGDAAEESNVAPVAVDSQVNPASGSSSRIAAVRGSDSNDHRSSNSYGSRGAMSFAAAAMAGLRSANGRGFRGGRDRHGRPLFGSSSDPPKLVFTSGGKQLNRHLTIYQAIQRQLVLDEDDDERYAGSDFLSSDGSRLWSDIYTITYHRAENQADRTSAGGSNTSTASKSTKSGSASNSNSNLQRVSLLDSILQAELPCDMEKSNPTHSILALLRVLDTLNQLAPRLRAQIVSDRFAEGKLFSLDELSVAGARVLPEEFINSKLTPKLARQIQDVLALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQHGADGLGMGSEREVRVGRLQRQKVRVSRNRILDSAVQVMEMYSSQKVMLEVEYFGEVGTGLGPTLEFYTLISHDLQKASLGMWRSNSSSDRSMEIDGDELKDEKINSAGFGSMVTNSDSIHAPLGLFPRPWSPNSDVSNGSQFSKVIEYFRLVGRVMAKALQDGRLLDLPLSTAFYKLVLGQELDLHDILSFDTEFGKILRELHVLVCRKQYLESTGGDNHEAIVNLSFRGTSIEDLYLDFSLPGYPDYMLKQGDENVNINNLEEYVSLVVDATVKTGIMRQIEAFREGFNQVFDITSLQVFTPNELDHLLCGRRELWEADSLADHIKFDHGYTAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKQSSTATNVPTNGTGLSESANDDLPSVMTCANYLKLPPYSTKEIMFKKLIYAISEGQGSFDLS 1612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 857089 867434 + Bpe005360.1 Bpe12g00120 112133

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00120 1612 Gene3D - 19 209 IPR011989 -
Bpe12g00120 1612 SUPERFAMILY Hect, E3 ligase catalytic domain 1180 1605 IPR035983 GO:0004842
Bpe12g00120 1612 SUPERFAMILY ARM repeat 21 364 IPR016024 -
Bpe12g00120 1612 Gene3D Hect, E3 ligase catalytic domain 1483 1610 - -
Bpe12g00120 1612 MobiDBLite consensus disorder prediction 368 390 - -
Bpe12g00120 1612 MobiDBLite consensus disorder prediction 402 430 - -
Bpe12g00120 1612 MobiDBLite consensus disorder prediction 995 1022 - -
Bpe12g00120 1612 MobiDBLite consensus disorder prediction 858 888 - -
Bpe12g00120 1612 MobiDBLite consensus disorder prediction 764 788 - -
Bpe12g00120 1612 MobiDBLite consensus disorder prediction 683 797 - -
Bpe12g00120 1612 MobiDBLite consensus disorder prediction 368 430 - -
Bpe12g00120 1612 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 20 1612 IPR045322 GO:0006511|GO:0061630
Bpe12g00120 1612 SMART hect_3 1200 1612 IPR000569 GO:0004842
Bpe12g00120 1612 Gene3D - 241 377 IPR011989 -
Bpe12g00120 1612 MobiDBLite consensus disorder prediction 683 727 - -
Bpe12g00120 1612 MobiDBLite consensus disorder prediction 909 932 - -
Bpe12g00120 1612 CDD HECTc 1187 1607 IPR000569 GO:0004842
Bpe12g00120 1612 Pfam HECT-domain (ubiquitin-transferase) 1234 1612 IPR000569 GO:0004842
Bpe12g00120 1612 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 20 1612 - -
Bpe12g00120 1612 ProSiteProfiles HECT domain profile. 1210 1612 IPR000569 GO:0004842
Bpe12g00120 1612 Gene3D Hect, E3 ligase catalytic domains 1127 1374 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00120 K10590 TRIP12; E3 ubiquitin-protein ligase TRIP12 [EC:2.3.2.26] - zju:107427509 2382.83
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe12g00120 Bpe15g00815 CCT
Bpe12g00120 Bpe15g00815 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00706 Bpe-Chr4:4544909 Bpe12g00120 Bpe-Chr12:857089 6.85E-74 transposed
Bpe04g01555 Bpe-Chr4:21883132 Bpe12g00120 Bpe-Chr12:857089 8.26E-22 transposed
Bpe05g00808 Bpe-Chr5:21390969 Bpe12g00120 Bpe-Chr12:857089 4.36E-32 transposed
Bpe09g00120 Bpe-Chr9:806869 Bpe12g00120 Bpe-Chr12:857089 4.31E-34 transposed
Bpe14g00480 Bpe-Chr14:4259654 Bpe12g00120 Bpe-Chr12:857089 3.92E-32 transposed
Bpe12g00120 Bpe-Chr12:857089 Bpe15g00815 Bpe-Chr15:18282935 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g154 . . . . . Bpe12g00120 . . . . Cma02g00257 Cma20g00754 . Car20g00655 . . . . . . . . . . . . . . . . . . . . Cone10ag1234 . . Chy11g00258 . Blo04g00566 Blo13g00505 Bda15g01035 . Bpe15g00815 . Bma03g00607 Bma08g00752 Sed01g0197 Cmo02g00253 Cmo20g00750 . . . . Cpe16g00315 Cpe05g01375 Bhi10g01854 Tan05g1142 Cmetu11g0032 . Hepe08g0290 . . Cla02g01165 Cam02g1242 Cec02g1251 Cco02g1292 Clacu02g1224 Cmu02g1192 Cre02g1504 . Csa02g01389 . Cme11g00383
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003449 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 2 2 2 1 1 3 4 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00120 Bpe_Chr12 FPKM 0.444444 0.0 0.0 0.0 0.0 0.0 0.328984 0.0 0.0 0.0