Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00130 ATGGGCATCGAACTAAACAATCAGGACATGGAAGAGGGAACACTGGAGGTTGGCATGGAGTACCGAACTGTTTCTGGGGTTGCTGGACCTTTGGTTATACTAGATAAAGTTAAGGGACCCAAATTCCAGGAAATCGTTAATATTCGCTTAGGAGACGGAACAACTCGACGTGGCCAAGTTCTTGAAGTTGATGGAGAGAAAGCTGTTGTTCAGGTTTTTGAAGGAACTTCGGGAATTGACAACAAATATACGACTGTGCAATTCACTGGTGAGGTCTTGAAAACCCCAGTCTCATTGGATATGCTGGGCCGCATATTTAATGGCTCTGGAAAACCCATTGATAATGGCCCTCCTATTTTGCCTGAGGCATACTTGGATATTTCTGGTGATTCTATTAACCCAAGTGAGAGAACATATCCGGAAGAGATGATACAGACTGGTATTTCTACCATTGATGTTATGAACTCCATTGCTAGAGGACAAAAGATTCCACTCTTTTCGGCTGCTGGTCTTCCCCATAATGAAATAGCTGCACAAATATGTCGGCAGGCTGGTTTAGTGAAACGGTTGGAGAAATCAGACAATCTTCTTGAGGACGGGGAAGAAGACAATTTTGCTATTGTTTTTGCAGCTATGGGTGTGAACATGGAAACTGCACAGTTTTTCAAACGAGATTTTGAAGAAAATGGATCAATGGAGAGAGTGACCCTTTTTCTGAATCTGGCTAATGATCCTACCATTGAGCGTATTATTACTCCTCGTATTGCTCTTACTACCGCCGAGTATTTGGCTTATGAATGTGGGAAGCACGTTCTTGTCATCTTGACTGATATGAGTTCTTATGCCGATGCTCTTCGTGAGGTAAATTTTCTTAAGCAGGAAATTGAGACAAACTTCTGCTTTCTGTTGCAGGTGTCTGCTGCTCGGGAGGAAGTACCTGGAAGGCGTGGATATCCTGGTTATATGTATACTGATCTGGCCACAATATATGAGCGTGCAGGACGAATTGAAGGACGAAAAGGCTCCATCACCCAAATTCCAATTCTTACTATGCCTAATGATGATATCACGCATCCAACACCAGATCTTACTGGATATATCACCGAGGGGCAGATATACATTGATAGGCAGCTACATAACCGACAGATTTATCCACCAATCAACGTCCTGCCTTCGTTATCTCGTCTGATGAAGAGTGCTATTGGCGAGGGAATGACTCGTAGGGATCATGCTGATGTATCCAATCAGCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAGGCAATGAAAGCGGTGGTTGGAGAAGAAGCTCTTTCTTCTGAAGACCTGCTTTATCTGGAATTCTTGGACAAATTTGAGAGGAAGTTCGTCACACAAGGAGCCTACGACACCCGTAATATCTTCCAGTCACTCGATTTAGCGTGGACGTTGCTTAGAATCTTCCCCCGTGAGCTCCTCCACCGTATACCAGCAAAGACCCTCGATCAGTACTACAGCCGAGAAACCGCTAATTAA 1518 43.87 MGIELNNQDMEEGTLEVGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGDSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVNFLKQEIETNFCFLLQVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRETAN 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 931133 934700 + Bpe005370.1 Bpe12g00130 112143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00130 505 PIRSF V-ATPsynth_beta/V-ATPase_B 296 505 IPR022879 -
Bpe12g00130 505 PIRSF V-ATPsynth_beta/V-ATPase_B 11 301 IPR022879 -
Bpe12g00130 505 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Bpe12g00130 505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 400 IPR027417 -
Bpe12g00130 505 Gene3D - 29 298 - -
Bpe12g00130 505 Gene3D - 300 505 - -
Bpe12g00130 505 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 3 505 IPR022879 -
Bpe12g00130 505 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034|GO:1902600
Bpe12g00130 505 ProSitePatterns ATP synthase alpha and beta subunits signature. 385 394 IPR020003 GO:0005524
Bpe12g00130 505 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 296 IPR000194 GO:0005524
Bpe12g00130 505 TIGRFAM V-ATPase_V1_B: V-type ATPase, B subunit 20 504 IPR005723 GO:0033180|GO:0046961|GO:1902600
Bpe12g00130 505 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 3 505 - -
Bpe12g00130 505 CDD ATP-synt_V_A-type_beta_C 404 498 - -
Bpe12g00130 505 CDD V_A-ATPase_B 92 396 - -
Bpe12g00130 505 Hamap V-type ATP synthase beta chain [atpB]. 18 503 IPR022879 -
Bpe12g00130 505 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 304 394 IPR000194 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe12g00130 Bpe15g00802 CCT
Bpe12g00130 Bpe15g00802 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00966 Bpe-Chr10:15166751 Bpe12g00130 Bpe-Chr12:931133 1.49E-24 dispersed
Bpe12g00130 Bpe-Chr12:931133 Bpe13g01042 Bpe-Chr13:16087843 1.64E-23 dispersed
Bpe12g00130 Bpe-Chr12:931133 Bpe15g00802 Bpe-Chr15:18223397 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00130 K02147 - pda:103720190 934.095