Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00131 ATGGATTCTGGTCGCATTGAAAGTGCACTCCACCTATTTGAAAGATTGTCTCAGTTGGACATTTACATCTGCAATGTCTTGATCAGGGGATTGACGGATCAAGGAATGTTTAAGGAAGCTATGAATATCTATTACATGATGAATTTCCAAAGAATTGGCACTGATAAATATACGTACCCTTTTGTAATCAAATCAATTGGTGGGTTGTTATCATTTGAAGAAGGCCAAAAGGTCCACGCTAAGTTATTTAAAGTTGGGTTGGAATTGGACGTTTACATTTGCAATTCTCTTCTTTTCATGTACGCAAAGCTTGGATTTATAGAGCTCGCAGAGAGGGTATTTCAAGAAATGCCTCTCAAAGACCTGGTTAGTTGGAACTCGATGATGAGTGGCTATGTTTCGGCCATGGATGGTTTGAGTTCGCTTAAGTGCTTTTCCAAAATGCAGAGGATTGGATTTAAATGTGACAGGTTCAGCTTGATTAATGCCCTTTCTGCTTGTTCTCTCGAGTTTTATGAACAAAGTGGAAAGGAGATTCACTGCCAAGCGTTTAGAACGGGGTTTGAAGAAGACGTAATGGTTCAAACAACTCTTGTCGATGTGTATGCGAAATGTTGTAGAATCGATTATGCAGAGAGGGTATTCGAAAGAATTTCTCGAAGAAGTGTTGCCACTTGGAATGCAATGATTGGCGGGTATGGATTGAATAATTGCATCTCATCAGCATTAGCTTGCTTAAAAAGTATTCAAGAAACTGACAGATTGAAACCTGACGGGATTACGATGATAAATATTCTTCCTTCTTTCGCACAGGTCGGAACTCTTTTGGAAGGAAAAGCTATTCATGGGTATTCCATTAGACAAGGATTTCTCCCAAATTTAGTATTGGAAACAGCTCTTCTTACAATGTATGGAGAATGTGGTAAATTGAATTCAGCAGTGGATCTGTTCGATCAAATGGCAGAGAAAAATCTTGCATCGCGGAATTCTTTAGTAGCTGCTTATGTACAGCATGGCCAGAGCCGGGAAGCCTTAGAGTTCTTTGAAAATCTCATGACTAAACCTCTTGAAATCGATGCAGTAACAATTGCAAGCATCTTACCTGCCTATGCTGAATCAGGATCATTGAGGAAGGGGCTAGAAATTCATGGGTATATTGTGAAATTGAAGTACTACTCGAATACTTTCGTCTCGAATTCTATGATCTACATGTATGCTAAATGTGGAGATTTATTCTCAGCGCAGAGGATTTTCGATAAAATGTCATTTAAGGATGTTATATCATGGAACACAATCGTTATGGCTTATGGAATTCACGGGTTCGGGGCTAAGTCCATCAAACTATTTGAAGAGATGAAGAAAATGGGCGTCAAACCCAATGAAAGCACCTTTGTTTCGCTACTTTTGTCATGTGCCATTTCTGGTTTGGATGATATGGGTTGGAAGTTCTTCAATTTGATGAAGAATGACTATAAAATAAATCCCGGCATAGAGCACTATGGCTGTATGATTGATCTCATTGGCCGGAGAGGTGACTTTGACCGAGCCAAGGCATTTATCGAAGAAATGCCGATAGCCCCTACAGCGCGGATATGGGGATCGTTACTTACGGCTAGCAGAAAGCATAAAAACATCGAATTTGCTGAATTTTCGGCCGATAAAATTTTGTCCTTTGGCCATGATAATACCGGATGTTATATCTTGCTGGCTAATATGTATGCTGAAGCAGGAAGATGGGAAGACGTGAAAAGGATCAAAACTCTTATGAACAAACAAGGATTGCTGAAAACAGTTGGATTCAGCTCCGTTGAGATCAAATCCAAGTCTCACAGATTTGTCAACCGCGATCGATCTCATGGAGATTCAAACATGATTTACGAAGTTCTCGACGTACTTTTGCAAAAAACAGAGGACAAGTTTGTTCATAATTTGGCCAAGTTTAGATTAGTAGAGTTGGATAAACATAAATCAAACAGACCCGATACACATAGTGTGAGATTGGCGATATGCTACGGGCTGATCTCCTCGGAGATTGGAAAACCCGTGATTGTCAAGAAGAACACGAGAATATGCGAGGATTGTCACGTTGCTTGTAAGAAGATTTCAACAGTCACGAAAAGGGAGATCATTGTTGGGGATTTTAAGGTTTTTCACCACTTCAAAAATGGGAATTGCTCCTGTGGAGATTATTGGCGATGA 2199 39.93 MDSGRIESALHLFERLSQLDIYICNVLIRGLTDQGMFKEAMNIYYMMNFQRIGTDKYTYPFVIKSIGGLLSFEEGQKVHAKLFKVGLELDVYICNSLLFMYAKLGFIELAERVFQEMPLKDLVSWNSMMSGYVSAMDGLSSLKCFSKMQRIGFKCDRFSLINALSACSLEFYEQSGKEIHCQAFRTGFEEDVMVQTTLVDVYAKCCRIDYAERVFERISRRSVATWNAMIGGYGLNNCISSALACLKSIQETDRLKPDGITMINILPSFAQVGTLLEGKAIHGYSIRQGFLPNLVLETALLTMYGECGKLNSAVDLFDQMAEKNLASRNSLVAAYVQHGQSREALEFFENLMTKPLEIDAVTIASILPAYAESGSLRKGLEIHGYIVKLKYYSNTFVSNSMIYMYAKCGDLFSAQRIFDKMSFKDVISWNTIVMAYGIHGFGAKSIKLFEEMKKMGVKPNESTFVSLLLSCAISGLDDMGWKFFNLMKNDYKINPGIEHYGCMIDLIGRRGDFDRAKAFIEEMPIAPTARIWGSLLTASRKHKNIEFAEFSADKILSFGHDNTGCYILLANMYAEAGRWEDVKRIKTLMNKQGLLKTVGFSSVEIKSKSHRFVNRDRSHGDSNMIYEVLDVLLQKTEDKFVHNLAKFRLVELDKHKSNRPDTHSVRLAICYGLISSEIGKPVIVKKNTRICEDCHVACKKISTVTKREIIVGDFKVFHHFKNGNCSCGDYWR 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 939616 941814 - Bpe005371.1 Bpe12g00131 112144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00131 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 20 54 IPR002885 -
Bpe12g00131 732 Gene3D Tetratricopeptide repeat domain 479 623 IPR011990 GO:0005515
Bpe12g00131 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 124 IPR002885 -
Bpe12g00131 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Bpe12g00131 732 Pfam PPR repeat family 424 471 IPR002885 -
Bpe12g00131 732 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 15 725 - -
Bpe12g00131 732 Gene3D Tetratricopeptide repeat domain 34 171 IPR011990 GO:0005515
Bpe12g00131 732 Gene3D Tetratricopeptide repeat domain 388 478 IPR011990 GO:0005515
Bpe12g00131 732 Gene3D Tetratricopeptide repeat domain 280 383 IPR011990 GO:0005515
Bpe12g00131 732 Gene3D Tetratricopeptide repeat domain 172 279 IPR011990 GO:0005515
Bpe12g00131 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Bpe12g00131 732 Pfam PPR repeat 123 153 IPR002885 -
Bpe12g00131 732 Pfam PPR repeat 225 250 IPR002885 -
Bpe12g00131 732 Pfam PPR repeat 298 324 IPR002885 -
Bpe12g00131 732 Pfam PPR repeat 399 422 IPR002885 -
Bpe12g00131 732 Pfam PPR repeat 23 47 IPR002885 -
Bpe12g00131 732 Pfam PPR repeat 93 119 IPR002885 -
Bpe12g00131 732 Pfam PPR repeat 329 351 IPR002885 -
Bpe12g00131 732 Pfam PPR repeat 196 221 IPR002885 -
Bpe12g00131 732 Pfam PPR repeat 499 523 IPR002885 -
Bpe12g00131 732 PANTHER BNAANNG11600D PROTEIN 15 725 - -
Bpe12g00131 732 Pfam DYW family of nucleic acid deaminases 654 731 IPR032867 GO:0008270
Bpe12g00131 732 TIGRFAM PPR: pentatricopeptide repeat domain 427 461 IPR002885 -
Bpe12g00131 732 TIGRFAM PPR: pentatricopeptide repeat domain 22 47 IPR002885 -
Bpe12g00131 732 TIGRFAM PPR: pentatricopeptide repeat domain 92 120 IPR002885 -
Bpe12g00131 732 TIGRFAM PPR: pentatricopeptide repeat domain 225 258 IPR002885 -
Bpe12g00131 732 Pfam E motif 542 604 IPR046848 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00131 - - - qsu:111992053 966.066
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00131 Bpe-Chr12:939616 Bpe10g00384 Bpe-Chr10:11426758 2.70E-15 dispersed
Bpe12g00131 Bpe-Chr12:939616 Bpe02g01078 Bpe-Chr2:13895334 4.44E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g208 . . . . . Bpe12g00131 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo13g00495 Bda15g01022 . . . . Bma08g00609 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017223 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00131 Bpe_Chr12 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0