Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00132 ATGGAGAAGATAACCAGCTTAAGCCATCTATTTGTTACAGTGTTTCTCTCCGGATTTTCGGGGTTAATGGTGATTCCAGCCATGACGGACGTCACGATGATGGCGCTTTGCCCTGGCCAAGACGAGTGCTCTCTCGCCATTTATCTCTCTGGTTTCCAGCAAGCGATTATTGGAGTTGGTGCTGTCATTTTAACACCAGTTATCGGGAATCTTTCTGACAAGTATGGGAGGAAAGCCATGCTGACTCTTCCTATGACAGCCTCCATTATTCCACTGGTGATACTGGCATACAGCAGGAGTAAAAACTTCTTTTATGCATACTACGCAGCCCGAACTCTCACTGCCATGGCTTCAGACAGTGCCATCAATTGCCTCGCTCTTGCATATGTGGCAGATTATATCTCACCAGGGAACAGAGCATTGGCCTTCGGAATTCTCTCTGGAGTCACTTCTGCCTCCTTTGTTTCTGGGACTTTGACTGCTCGCTTCCTTTCTCCTGCATCCACATTTCAGATGGCTGCATTTGCATCGATGGTCGCAGTAGTGTACATGAGAATTTTCCTCAAAGAAAGCATTCCAGAAAGAAATGAATCAACAGAGCCGATGTTGAAGGAAGAGCCAAGTACTAGTGAAGGAGGTGAGGAGTTGCCAAAAACAGTACAGAAGTTCAAAAACATTCCATCATTTGGGAATGTCATTTGCTTGCTCAAGAACAGCCGCACACTTTCACAAACAGCTGTAATTTCATTCTTCAATGGCCTCGCAGAAGGTGGACTGATAGCATCTTTGATGTACTTCTTGAAAGCCCGCTTCCATTTCAACAAGAACCAGTTCGCAGATTTAATGCTTGTTGGTGGAGTTGTAGGAACAGCTTCGCAGAGCATTAGAAGCAGTCATTTCCTCCTGAAGCACTATAATGATTTTTTTTTCGTATTTTGTTTGATTATGTTTATTAACAGCATATCATGGTCGATTTGGGTTCCCTATGCTACAACTTTCTTTTCTTTTCTCTCTGTTTTCGTCAACCCAAGTGTAAGTCATTTGCTGTTTTCAAAATTTAATTTACTTAATGATACAAATCAGGGAAAGGCTCAAGGATGCATTTCAGGCATAAATTCGTTTGCTAGCATTATTTCTCCACTAGTATTCACTCCTTTAACAGCATTGTTTCTGTCAGAAAAACCACCCTTCAAGTACCCTGGCTTCAGTATTATGTGCATTGGTGTCGCTTCGGTAGGAACTCTTAACTCCCCAAACCATGCTCGGCTGAAAGTAGGAAAAACACATGAGAAACATCTCAATTTGATCAGAAATCTTAACTCTGTCGCTCTCTTAGATAGAGAAATTCAACTTCTAGCCTCCTCGACTTATTCTATGACTTGGATTCTAATCACCGGTTGTTGTTTGCTGATAAATTAA 1419 42.21 MEKITSLSHLFVTVFLSGFSGLMVIPAMTDVTMMALCPGQDECSLAIYLSGFQQAIIGVGAVILTPVIGNLSDKYGRKAMLTLPMTASIIPLVILAYSRSKNFFYAYYAARTLTAMASDSAINCLALAYVADYISPGNRALAFGILSGVTSASFVSGTLTARFLSPASTFQMAAFASMVAVVYMRIFLKESIPERNESTEPMLKEEPSTSEGGEELPKTVQKFKNIPSFGNVICLLKNSRTLSQTAVISFFNGLAEGGLIASLMYFLKARFHFNKNQFADLMLVGGVVGTASQSIRSSHFLLKHYNDFFFVFCLIMFINSISWSIWVPYATTFFSFLSVFVNPSVSHLLFSKFNLLNDTNQGKAQGCISGINSFASIISPLVFTPLTALFLSEKPPFKYPGFSIMCIGVASVGTLNSPNHARLKVGKTHEKHLNLIRNLNSVALLDREIQLLASSTYSMTWILITGCCLLIN 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 943580 947102 + Bpe005372.1 Bpe12g00132 112145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00132 472 CDD MFS_SLC46_TetA_like 10 409 - -
Bpe12g00132 472 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 192 IPR020846 GO:0022857
Bpe12g00132 472 PRINTS Tetracycline resistance protein signature 143 165 IPR001958 GO:0022857
Bpe12g00132 472 PRINTS Tetracycline resistance protein signature 364 387 IPR001958 GO:0022857
Bpe12g00132 472 PRINTS Tetracycline resistance protein signature 50 69 IPR001958 GO:0022857
Bpe12g00132 472 Gene3D MFS general substrate transporter like domains 5 415 IPR036259 -
Bpe12g00132 472 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 6 414 - -
Bpe12g00132 472 SUPERFAMILY MFS general substrate transporter 10 415 IPR036259 -
Bpe12g00132 472 Pfam Major Facilitator Superfamily 10 380 IPR011701 GO:0022857|GO:0055085
Bpe12g00132 472 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 6 414 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00132 - - - jre:108993381 504.597
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe12g00132 Bpe15g00800 CCT
Bpe12g00132 Bpe15g00800 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01646 Bpe-Chr4:22609654 Bpe12g00132 Bpe-Chr12:943580 1.11E-61 dispersed
Bpe12g00132 Bpe-Chr12:943580 Bpe15g01360 Bpe-Chr15:21627434 7.52E-68 dispersed
Bpe12g00132 Bpe-Chr12:943580 Bpe15g00800 Bpe-Chr15:18215366 3.60E-134 wgd
Bpe12g00132 Bpe-Chr12:943580 Bpe05g00163 Bpe-Chr5:4813159 1.11E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g211 . . . . . Bpe12g00132 . . Cmo19g00768 . . . . Car20g00636 . . Cpe15g00610 Bhi05g01676 Tan02g0650 . . Hepe02g0405 . . Cla02g00405 Cam02g0410 Cec02g0410 Cco02g0427 Clacu02g0413 Cmu02g0409 Cre02g0744 Cone12ag1249 . . . . Csa07g00124 . Cme01g01232 Blo04g00585 Blo13g00494 Bda15g01021 Bda14g00627 Bpe15g00800 . . . . . . . Cma19g00755 . Car19g00589 Cpe16g00333 Cpe05g01357 . . . . . . . Cla02g01087 Cam02g1163 Cec02g1162 Cco02g1210 Clacu02g1155 Cmu02g1117 Cre02g1420 Lsi11g01219 . Chy01g00659 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000412 3 14 3 1 3 5 3 5 5 4 3 5 2 4 5 2 5 1 3 5 4 3 4 4 3 6 3 4 9 2 123
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00132 Bpe_Chr12 FPKM 14.382196 16.20031 23.982782 25.029131 18.616348 18.951181 19.326502 44.603966 40.352348 41.497379