Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00143 AGAAGCGGAAGAAGACGGACGCTAATGGCTTCTCCTTCTTCGCTTCTTCTTTTATTCATTATCTCCGCCATCGCACCCACTTTAACCGCCCAGACGCCGCCGTCATTCCGCTGCAGCTCAAAATCCACATGCCGTGCTCTAATTGACTACGTGACTCCAAACGCCACCACTCTCTCCTCCATCCAAACTCTCTTCCAGATCCAAAACCTCCGAATGCTCCTCGGCGCCAACAATCTCCCAGATTCCACCGCCTCCAACTTCTCTATCCCCGCCTCGCAGAAGATCATCATTCCCTTCCCCTGCGCCTGCAGTAACGGTACCGGAATCTCGGACCGGCTGCCAATTTACACGGTCCAACCAGGCGACGGTCTCGATCACATCGCCGTCAATGTTTTCTCTCGATTAGTGACGTACCAGCAAATCCAGACCGTCAATAATATTTCCGACGCCAACAAAATTCTGGTGGGCCAGGAGCTTCGGATTCCACTGCCTTGTAGCTGCGACGAGGTGGACGGGCTTAGAGTTGTCCACTACGGGCACGTGGTGGCTAGTGGGAGCTCGCTGGAGGCGATAGCCGGAGCTTACGAATTATCGGAGAAGACAGTAATGGAGCTGAACGGAATCGCCAATGCCAGTGATCTTCAGGCGGGTCAAGTTCTTGACCTTCCCCTTCGAGCTTGTAACTCATCGGTGCCAAGCTACTCTCCCGACTACCCTTTACTGGTCTCCAACGGTACATGGGTTGACACTGCCGGCGGCTGCGTCAAGTGCGAGTGCAATGCAACCTTTGGGTGGACGTAA 801 54.31 RSGRRRTLMASPSSLLLLFIISAIAPTLTAQTPPSFRCSSKSTCRALIDYVTPNATTLSSIQTLFQIQNLRMLLGANNLPDSTASNFSIPASQKIIIPFPCACSNGTGISDRLPIYTVQPGDGLDHIAVNVFSRLVTYQQIQTVNNISDANKILVGQELRIPLPCSCDEVDGLRVVHYGHVVASGSSLEAIAGAYELSEKTVMELNGIANASDLQAGQVLDLPLRACNSSVPSYSPDYPLLVSNGTWVDTAGGCVKCECNATFGWT 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1052260 1053490 + Bpe005382.1 Bpe12g00143 112156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00143 266 ProSiteProfiles LysM domain profile. 114 161 IPR018392 -
Bpe12g00143 266 SUPERFAMILY LysM domain 179 223 IPR036779 -
Bpe12g00143 266 SMART LysM_2 179 223 IPR018392 -
Bpe12g00143 266 SMART LysM_2 115 162 IPR018392 -
Bpe12g00143 266 SUPERFAMILY LysM domain 115 163 IPR036779 -
Bpe12g00143 266 ProSiteProfiles LysM domain profile. 178 222 IPR018392 -
Bpe12g00143 266 CDD LysM 180 220 IPR018392 -
Bpe12g00143 266 Gene3D LysM domain 176 232 IPR036779 -
Bpe12g00143 266 Gene3D LysM domain 114 170 IPR036779 -
Bpe12g00143 266 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 15 261 - -
Bpe12g00143 266 CDD LysM 115 161 IPR018392 -
Bpe12g00143 266 Pfam LysM domain 116 162 IPR018392 -
Bpe12g00143 266 Pfam LysM domain 180 223 IPR018392 -
Bpe12g00143 266 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 15 261 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00143 - - - jcu:105630073 323.553
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01637 Bpe-Chr2:19175690 Bpe12g00143 Bpe-Chr12:1052260 2.46E-33 dispersed
Bpe12g00143 Bpe-Chr12:1052260 Bpe14g01221 Bpe-Chr14:9129673 1.70E-10 dispersed
Bpe12g00143 Bpe-Chr12:1052260 Bpe14g00746 Bpe-Chr14:5740847 1.09E-08 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00143 . 27 266 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 50.6 2.7e-61 232.6
Bpe02g01637 . 33 393 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 72.7 1.8e-152 535.8
Bpe02g01637 . 30 400 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 64.4 2.1e-137 485.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012966 0 1 1 1 1 1 1 1 0 0 1 1 1 1 1 0 1 2 1 1 0 0 1 1 2 0 1 2 2 2 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00143 Bpe_Chr12 FPKM 3.583744 2.106057 5.421038 3.695392 33.738747 37.961128 35.587494 28.181049 27.215603 25.870804