Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00148 GTGGAGGATATGGGCGGCGGTGGTGATTCCGGTGAGCCTAGAATAGGTGGTGACGGTGAAGAAGGGGTCGTGGTTAATATTCGCTGCTCGAACGGTACGAAATTTACGGTGAGGACGAGCCTCGAGTCAACGGTTGGAGCCTTTAAAGTAATTTTAGCTCAGAATTGCGATGTTCCTGCTGATCAGCAGCGCTTGATCTACAAAGGCCGCATTCTGAAGGATGACCAGACCTTAGATAGTTATGGTATGCAGGCAGATCATACAGTTCACATGGTTCGAGGTTTTGCTCCTTCTGCATCAGCGGCAACTACAACTGCTGCTGCTGCTGTTGCTAATACTGGAACTGCTAACAGCACTCCAGGTGTCACAAGAGGTGTTGGTTCCACTGATAGTGGAGCTTTAGGAAATGCAACACCTTTATTTCCTGGACTGGGTTTCAACCCACTAGGTGGAGGTGGAGCATCTGGTTTGTTTGGAGCGGGTCTTCCAGAATTCGAGCAAGTGCAACAACAACTGACTCAGAACCCAAACATGATGAGGGAAATAATGAACATGCCTGCAATTCAAAACCTAATGAATAATCCTGATTTGATGCGAACTTTGATTATGAGCAATCCTCAAATGCAGGAAATTATTGACAGAAATCCAGAACTTGCTCATATTCTTAATGATCCTGGCATTCTTAGGCAGACCTTAGAGGCTGCAAGGAATCCAGAACTCATGCGTGAGATGATGAGAAACACTGACAGGGCTATGAGTAATATTGAATCCAGTCCCGAAGGATTCAACATGCTGAGGCGTATGTATGAAAATGTCCAAGAGCCATTTATGAATGCTACCACAATGGGTGGGAATACTGGAAACGATTTGAGTTCAAACCCCTTTACAGCCCTGTTAGGAAACTCAGGCGGGGCCCAAGCTAGGTCTGGGGTTAATAATACTTCAGCCACTGGAACTGAAACAAATACAGGGACCACTGCTCCAAATACGAATCCACTTCCTAATCCATGGGGGGGAAATCAAGCAAACACTACAAGGCCCAATCCCGCTGGGGAATCTAGGACTCCTAGAATTGGTGATTTGGGAGGGCTTGGTCTTCCTGATATGGAGCAGATGATGAGTGGTGGGCCTGATTCTGCTATGTTGAATCAGTTTTTGCAAAACCCCGCAATATCCCAGATGATGCAAAGCCTGCTCTCTAACCCTCAATATATGAATCAGATTCTCAGTCTCAACCCCCAGCTGCGGGGCATGGTTGACATGGATCCTCAATTAAGAGAAATGATGCAAAATCCAGAGCTTCTTCGCCAGTTAACAAATCCTGAGACAATGCAGCAAATGTTATCACTACAGCAATCACTTCTGTCTCAGCTTGGTCAACAACAATCAAATCAAGATCCAGCTCAAACAACGAGGACTGCAGGAACTCCCAATAATGCTGGATTAGAGTTGTTGATGAACATGTTCGGTGGTCTTGGAGCTGGTGGAATGACTGTCCCTAGCAATCCCAATGTCCCCCCAGAAGAACTATATGCAACTCAGCTTTCGCAGCTTCAAGAAATGGGATTTTTCGACACACAAGAGAATATAAGGGCACTTCGGGCCACTGCAGGGAACGTACATGCGGCGGTAGAGCGACTTTTGGGGAATCCAGGGCCGTAG 1662 46.63 VEDMGGGGDSGEPRIGGDGEEGVVVNIRCSNGTKFTVRTSLESTVGAFKVILAQNCDVPADQQRLIYKGRILKDDQTLDSYGMQADHTVHMVRGFAPSASAATTTAAAAVANTGTANSTPGVTRGVGSTDSGALGNATPLFPGLGFNPLGGGGASGLFGAGLPEFEQVQQQLTQNPNMMREIMNMPAIQNLMNNPDLMRTLIMSNPQMQEIIDRNPELAHILNDPGILRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFMNATTMGGNTGNDLSSNPFTALLGNSGGAQARSGVNNTSATGTETNTGTTAPNTNPLPNPWGGNQANTTRPNPAGESRTPRIGDLGGLGLPDMEQMMSGGPDSAMLNQFLQNPAISQMMQSLLSNPQYMNQILSLNPQLRGMVDMDPQLREMMQNPELLRQLTNPETMQQMLSLQQSLLSQLGQQQSNQDPAQTTRTAGTPNNAGLELLMNMFGGLGAGGMTVPSNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATAGNVHAAVERLLGNPGP 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1069015 1072379 + Bpe005385.1 Bpe12g00148 112161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00148 553 Pfam Ubiquitin family 25 92 IPR000626 GO:0005515
Bpe12g00148 553 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 4 552 - -
Bpe12g00148 553 MobiDBLite consensus disorder prediction 1 20 - -
Bpe12g00148 553 SUPERFAMILY Ubiquitin-like 19 101 IPR029071 -
Bpe12g00148 553 SUPERFAMILY UBA-like 507 549 IPR009060 GO:0005515
Bpe12g00148 553 Gene3D - 493 553 - -
Bpe12g00148 553 Gene3D - 200 258 - -
Bpe12g00148 553 ProSiteProfiles Ubiquitin domain profile. 23 92 IPR000626 GO:0005515
Bpe12g00148 553 MobiDBLite consensus disorder prediction 456 479 - -
Bpe12g00148 553 CDD Ubl_Dsk2p_like 23 95 - -
Bpe12g00148 553 MobiDBLite consensus disorder prediction 300 364 - -
Bpe12g00148 553 PANTHER UBIQUILIN 4 552 - -
Bpe12g00148 553 MobiDBLite consensus disorder prediction 300 351 - -
Bpe12g00148 553 Pfam UBA/TS-N domain 511 547 IPR015940 -
Bpe12g00148 553 SMART uba_6 511 549 IPR015940 -
Bpe12g00148 553 SMART ubq_7 23 94 IPR000626 GO:0005515
Bpe12g00148 553 Gene3D - 17 108 - -
Bpe12g00148 553 CDD UBA_PLICs 511 549 - -
Bpe12g00148 553 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 506 550 IPR015940 -
Bpe12g00148 553 SMART CBM 151 192 IPR006636 -
Bpe12g00148 553 SMART CBM 205 244 IPR006636 -
Bpe12g00148 553 SMART CBM 359 408 IPR006636 -
Bpe12g00148 553 SMART CBM 412 447 IPR006636 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00148 K04523 UBQLN, DSK2; ubiquilin - qsu:112012853 805.053
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02157 Bpe-Chr2:22851800 Bpe12g00148 Bpe-Chr12:1069015 1.15E-10 dispersed
Bpe12g00148 Bpe-Chr12:1069015 Bpe13g01129 Bpe-Chr13:16841952 5.47E-10 dispersed
Bpe12g00148 Bpe-Chr12:1069015 Bpe15g00787 Bpe-Chr15:18123373 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g281 . . . . . Bpe12g00148 . . Cmo19g00813 Cmo11g01783 . . . . Sed05g2177 Cpe04g00628 Cpe15g00637 Bhi05g01590 Tan02g0585 Cmetu01g0562 . . . . Cla02g00354 Cam02g0363 Cec02g0364 Cco02g0371 Clacu02g0354 Cmu02g0351 . Cone12ag1271 Cone8ag1325 . . . Csa07g00180 . . Blo04g00603 Blo13g00475 . Bda14g00644 . . Bma03g00635 . . . . . Cma19g00792 Car11g01410 Car19g00609 . . . . . . . . . . . . . . . . Lsi11g01279 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005812 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 0 1 1 1 1 2 1 3 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00148 Bpe_Chr12 FPKM 181.6465 206.176392 190.495422 196.93045 174.884995 179.017334 170.268906 120.251747 121.193733 125.246605