Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00149 ATGGGTAAGGTAGTGGAGACGACGAAGAAGAAGAAAGGACGGCCCTCTCTGTTGGATCTTCAAAAACGCACAATCAAACAACTCCAGCACCAGCAGAATAATTCCTTCAATAACTCTCCCTCTCATTCCAACCCTAATTCCACAACTGCTACTGCCGTTCGGCGATCTACCCGCCGGAACCCCGTCCCCAATTCCCTCTCGCCGGAGGACGATTCAGAAGACCAAGGACACCCCGAAGACGACGAAGATTTTGACGGAAAGCGCCGCGAGAAGAAACTCAAGCTTGTCCTTCGACTGCCCTCTCAGAAATCGTCTTTGAATTCGTCGTCCTTGAATTCTTCTGGCTCGGATTCGAATGCGGAGGTGGATGACGGTGAGTCGGCTAAGAAGAAGCGAAAAATCAATGCAATCGGAGATGGATCTGGGCTCGGAAACCTCGAAAAGAGTGAAAAGTCAATTTCTGGTCCAAATCCCACCAAAGGCCTCCAAGGTTTGCTTTTGGATTTTGGACCTTCGACCCAATTACCGGATGAGAAGCTTTTACTGTTCGTCCTGGACAGACTTCAAAAGAAGGACACATATGGTGTGTTTTCTGAACCAGTGGACCCGGAAGAGCTTCCAGATTACCATGAAGTTATTGAGTACCCGATGGATTTTGCGACTGTAAGGAAGAAGCTTGCTAGCCGGGCTTATGTGAAAATGGAAGAGTTCGAGAAAGATGTTTTCTTAATCTGCTCAAATGCAATGAAGTACAATGCTCCAGATACTATCTACTTTAGGCAGGCGCGATCTATACAAGAATTGGCTAAAAAGAGCTTCAGGAATTTGAGACAAGATAGTGATGACAACGAGCCAGAGCCTAAAGTAGTCAGGAGAGGAAGGCCACCAACTAAGAATTTGAAGCAGTCACAGGGACAGGCGATCTTTGATCGTGCTAGGCCAGAGTTATCTGATGCTACTCTTGCCACGGGTGGAGAAAATACCAAGTATTATGATCTGCGAAAGGGACCTCATCAGTCGGAGAAATTTCCTGGTTCTCGCATTAATGATGCTAATACGAATTGGTTGGCTGAGAACAGATTTGAAAGAAACGATGATGTTCCTGGCTCTCTGTTGAAGAGTTACCTAACAAAGAATGGGAAAAAGGTAGTAATATTAGATGAAAACAAGCGCAACACATATACACAATTCCAATTGTCGGCTGGTGGAAGAGAGCTACCAGTTATGAATATGTTTGCTAGAGAGAGAAAGCAACTAATGCCTGTGGGAATTAACACGGAGAACGGTTATGCTAGAAGCCTTGCTCGATTTGCTGCTAATCTTGGCCCTGTTGCTTGGCAAGTTGCTTCTAAGAAGATTGAAAGATGTTTGCCTGCCGGAGTCAAGTTCGGCCGTGGTTGGGTTGTTGAAAACGATGTCATACCTTCCAGACCACTGCTATCACCATCCACAGAAGGCCAAGTATTATTATTGCAGCCGTTTCTTGGCCAGGATAGCTTATTTCCGGTAGCAGCAGCTAGCACTCCTGATCTTAAGGAGGTTAAATCACTCAAAATTCTGAACGAAAACATTGCCACGGAGAAGCATATGCCTCCAATGAGTTCTTGCTCAGATGGAAATCTTCCCAAAACTCCTTTTGAATCTATCTACACGTCATCATCCCCTTTTGGTACTAAGCAATCGCCCGAACCTCTGACAGGAAAAGGTCATTACATACTTAACAGCAGTGCAAATCCAGTTCAGCCGAAGCCTTCATTTCAGGTTCATAAAAGTTCTTTACAAACTGGTATGAATGGATATAGTAATGGTGCCTATGGCTTCCACCTGTCAGATCAGCTAGGAAAACTAATTGGATCAGCTGGAGTAAACTTGGAGTCATCTCAAATGGTTGACACAATCTCCAGAACTACTAACTCTGACGTCCACCATCCAGCCACTCTGAAAAATGTAATTCCGGCAAGTACGAGTAGAGTAAACCCAGGAAGTTCATTATTTAAACATGATGAGGTATTGATGACACCTCAGCCCAAGGTTGAATCAGTTCCTCCGGATCTTAATGTCGGATTTCAGTCTCCAGGATCACCACTCTCTGCCCGAGTCGGCTCGGCTACATATCCTGACTTAGCATTGCAGCTCTGA 2139 45.25 MGKVVETTKKKKGRPSLLDLQKRTIKQLQHQQNNSFNNSPSHSNPNSTTATAVRRSTRRNPVPNSLSPEDDSEDQGHPEDDEDFDGKRREKKLKLVLRLPSQKSSLNSSSLNSSGSDSNAEVDDGESAKKKRKINAIGDGSGLGNLEKSEKSISGPNPTKGLQGLLLDFGPSTQLPDEKLLLFVLDRLQKKDTYGVFSEPVDPEELPDYHEVIEYPMDFATVRKKLASRAYVKMEEFEKDVFLICSNAMKYNAPDTIYFRQARSIQELAKKSFRNLRQDSDDNEPEPKVVRRGRPPTKNLKQSQGQAIFDRARPELSDATLATGGENTKYYDLRKGPHQSEKFPGSRINDANTNWLAENRFERNDDVPGSLLKSYLTKNGKKVVILDENKRNTYTQFQLSAGGRELPVMNMFARERKQLMPVGINTENGYARSLARFAANLGPVAWQVASKKIERCLPAGVKFGRGWVVENDVIPSRPLLSPSTEGQVLLLQPFLGQDSLFPVAAASTPDLKEVKSLKILNENIATEKHMPPMSSCSDGNLPKTPFESIYTSSSPFGTKQSPEPLTGKGHYILNSSANPVQPKPSFQVHKSSLQTGMNGYSNGAYGFHLSDQLGKLIGSAGVNLESSQMVDTISRTTNSDVHHPATLKNVIPASTSRVNPGSSLFKHDEVLMTPQPKVESVPPDLNVGFQSPGSPLSARVGSATYPDLALQL 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1086321 1091023 - Bpe005386.1 Bpe12g00149 112162

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00149 712 MobiDBLite consensus disorder prediction 274 293 - -
Bpe12g00149 712 ProSiteProfiles Bromodomain profile. 189 259 IPR001487 GO:0005515
Bpe12g00149 712 CDD Bromodomain 177 271 - -
Bpe12g00149 712 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 712 - -
Bpe12g00149 712 MobiDBLite consensus disorder prediction 100 121 - -
Bpe12g00149 712 MobiDBLite consensus disorder prediction 25 157 - -
Bpe12g00149 712 SUPERFAMILY Bromodomain 174 282 IPR036427 GO:0005515
Bpe12g00149 712 Coils Coil 710 712 - -
Bpe12g00149 712 SMART bromo_6 170 278 IPR001487 GO:0005515
Bpe12g00149 712 MobiDBLite consensus disorder prediction 274 305 - -
Bpe12g00149 712 Gene3D - 174 292 IPR036427 GO:0005515
Bpe12g00149 712 MobiDBLite consensus disorder prediction 25 69 - -
Bpe12g00149 712 Pfam Bromodomain 184 263 IPR001487 GO:0005515
Bpe12g00149 712 ProSitePatterns Bromodomain signature. 195 251 IPR018359 -
Bpe12g00149 712 PRINTS Bromodomain signature 222 240 IPR001487 GO:0005515
Bpe12g00149 712 PRINTS Bromodomain signature 192 205 IPR001487 GO:0005515
Bpe12g00149 712 PRINTS Bromodomain signature 240 259 IPR001487 GO:0005515
Bpe12g00149 712 PRINTS Bromodomain signature 206 222 IPR001487 GO:0005515
Bpe12g00149 712 MobiDBLite consensus disorder prediction 122 136 - -
Bpe12g00149 712 MobiDBLite consensus disorder prediction 81 97 - -
Bpe12g00149 712 MobiDBLite consensus disorder prediction 552 584 - -
Bpe12g00149 712 PANTHER BROMODOMAIN AND WD REPEAT-CONTAINING PROTEIN 1-LIKE 1 712 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00149 K22184 BRD9; bromodomain-containing protein 9 - qsu:111985563 697.967
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe12g00149 Bpe15g00784 CCT
Bpe12g00149 Bpe15g00784 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00789 Bpe-Chr3:27858339 Bpe12g00149 Bpe-Chr12:1086321 1.38E-84 dispersed
Bpe04g00283 Bpe-Chr4:1813579 Bpe12g00149 Bpe-Chr12:1086321 1.96E-118 dispersed
Bpe09g00169 Bpe-Chr9:1164103 Bpe12g00149 Bpe-Chr12:1086321 1.09E-85 dispersed
Bpe10g00389 Bpe-Chr10:11457785 Bpe12g00149 Bpe-Chr12:1086321 5.51E-12 dispersed
Bpe12g00149 Bpe-Chr12:1086321 Bpe08g00614 Bpe-Chr8:4837509 6.55E-10 dispersed
Bpe12g00149 Bpe-Chr12:1086321 Bpe15g00784 Bpe-Chr15:18097867 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g294 . . . . . Bpe12g00149 . . Cmo19g00818 Cmo11g01786 . . . . . Cpe04g00631 Cpe15g00642 Bhi05g01248 Tan02g0781 . . . . . Cla02g00347 Cam02g0356 Cec02g0357 Cco02g0363 Clacu02g0348 Cmu02g0345 Cre02g0677 . . . . . Csa07g00186 . Cme01g01147 Blo04g00606 Blo13g00473 . Bda14g00648 Bpe15g00784 . Bma03g00637 Bma08g00717 . . . Cma11g01333 Cma19g00798 Car11g01413 Car19g00614 . . . . . . . . . . . . . . . . Lsi11g01285 . Chy01g00594 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005813 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00149 Bpe_Chr12 FPKM 9.653541 9.115537 9.069977 7.87539 15.185366 12.612214 12.243336 5.862228 5.609248 6.818417