Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00157 ATGGAGAGTGTGTCAGAGCTGGTTCCATTTCCATTGTTGTTGACTCCTATTGACTCCAATTACAGAGCTTGTACCGTTCCGTTCCGTTTCCCTTCCGACAATCCTCGCAAGCCAACCCCCACTGAGATTTCCTGGATCGACGTCTTCCTCAATTCCATCCCCTCTTTCAAGAAAAGGGCGGAGAGTGATTCAACAACTCCTGATGCTTCCATCAAGGCTGAAAAATTTGCCGAAAGGTATGCTGAGATCCTTGACGATTTCAAGAAAGACCCAGAGAGTCATGGGGGTCCACCTGATGTCATTCTTCTCTGTAGAATTCGGGAGCAAGTCCTAAGAGAATTGGGATTTAAAGATATATTCAAGAGAGTTAAGAACGAAGAGAATGCAAAGGCTATATCTTTATTTTCAGATGTAGTTCAGCTTAATGATGCTATTGGAGATGGAAGCAAACGTTTGGAGAATCTTGTTAGAGGAATATTTGCGGGCAACATATTTGATCTTGGTTCTGCTCAGCTAGCTGAGGTGTTCTCAAGAGATGGAATGTCCTTTCTGGCGAGCTGTCAAAATATTGTTCCTCGACCTTGGGTTATTGATGATTTGGAAAATTTTAAATTGAAATGGAATAAGAAACCTTGGAAGAAGGCAAGTTTAACTCTACCTGCTGTAATTTTTGTGGATAATTCTGGTGCGGATATAATTCTGGGTATCTTGCCATTTGTAAGAGAGTTACTTCGACGTGGGACACAGGTTATCTTAGCAGCTAATGACTTGCCATCAATCAATGATGTAACTTATGTTGAACTGATTGAAATTATTTCAAAGCTGAAGGACGAAAAGGGGCAGCTCCTAGGTGTTGATGCTTCCAATCTCTTAATCGCCAATTCTGGCAATGATTTACCTGTTATTGATCTGTCAAAGGTGTCCCAGGAGCTTGCATACTTGGCAACTGATGCTGATCTTGTTATTATGGAAGGAATGGGTCGAGGAATAGAAACAAATCTTTATGCTCGGTTTAAGTGTGATTCTGTGAAGATTGGAATGGTGAAACATCCAGAGGTTGCTCAATTTCTTGGAGGACGGCTTTATGATTGTGTCTTCAAATACAACGAAGTTTTGAGTTAG 1122 41.27 MESVSELVPFPLLLTPIDSNYRACTVPFRFPSDNPRKPTPTEISWIDVFLNSIPSFKKRAESDSTTPDASIKAEKFAERYAEILDDFKKDPESHGGPPDVILLCRIREQVLRELGFKDIFKRVKNEENAKAISLFSDVVQLNDAIGDGSKRLENLVRGIFAGNIFDLGSAQLAEVFSRDGMSFLASCQNIVPRPWVIDDLENFKLKWNKKPWKKASLTLPAVIFVDNSGADIILGILPFVRELLRRGTQVILAANDLPSINDVTYVELIEIISKLKDEKGQLLGVDASNLLIANSGNDLPVIDLSKVSQELAYLATDADLVIMEGMGRGIETNLYARFKCDSVKIGMVKHPEVAQFLGGRLYDCVFKYNEVLS 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1145136 1151852 - Bpe005394.1 Bpe12g00157 112170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00157 373 Gene3D - 28 117 IPR035073 -
Bpe12g00157 373 PIRSF UCP030210 7 373 IPR016949 -
Bpe12g00157 373 SUPERFAMILY AF1104-like 9 370 IPR036075 -
Bpe12g00157 373 Pfam Damage-control phosphatase ARMT1-like domain 52 362 IPR002791 -
Bpe12g00157 373 PANTHER PANTOTHENATE KINASE 5 371 IPR004567 GO:0004594|GO:0005524|GO:0015937
Bpe12g00157 373 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 196 372 - -
Bpe12g00157 373 PANTHER - 5 371 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00157 K24854 K24854; damage-control phosphatase, subfamily II, stand-alone protein [EC:3.1.3.-] - qsu:112002910 640.188
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe12g00157 Bpe15g00776 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe15g00638 Bpe-Chr15:17168853 Bpe12g00157 Bpe-Chr12:1145136 2.34E-56 transposed
Bpe12g00157 Bpe-Chr12:1145136 Bpe15g00776 Bpe-Chr15:18062315 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g307 . . . . . Bpe12g00157 . . Cmo19g00830 . . . . . . . Cpe15g00651 Bhi05g01551 Tan02g0548 . . Hepe02g0351 . . . . . . . . . . . Cone3ag1254 Cone10ag1207 . Csa07g00208 . . Blo04g00611 Blo13g00465 . . Bpe15g00776 . Bma03g00643 Bma08g00710 . . . . . . Car19g00627 . . . . . . . . . . . . . . . . Lsi11g01303 . Chy01g00572 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007984 0 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00157 Bpe_Chr12 FPKM 3.277475 3.236387 3.491595 3.135143 5.356744 4.903989 5.864841 4.828178 3.658821 3.960674