Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00159 ATGTCAGCTTCGCAAGCCCTAGGCGGCGCATCCAGGTGTGGTCGCGTGCTCGGCCCTTCTCTTGATAAGATCATAAAGAACGCAGCTTGGAGGAAGCACTCCCACCTGGTTTCCACCTGTAAATCGGCGCTTGACAAGCTTGACTCTCTATCCGTCTCAGTTTCATCCGATGCTGGTTCTCCGCTCTTCGGTCTGTCCCCCTCCGATGCTGAATTTGTTCTCCAACCTCTCCTTTTGGCCCTTGAATCGGCTTATGGGAAGGTCATCGACCCCGCACTTGAATGCGCCTTCAAATTGTTCTCTCTTGGCTTGTTTCGCGGAGAGATCAATCGCCCCGAAGACTATTCCAATGATTCGCATCCTCCGACCGCACTGTCAAGGATCATGGAGGCTGTTTGCAAGTCTTCGGCTCTAGGTGAAGAAGGCATTGAGCTTGCTGTGCTCAGGGTCTTACTCTCTGCCATTCGATCACCATGCGTTTTGATCCGCCGAGATTGCTTAATTAATGTTGTCCGTACTTGTTATAATGTGTATCTCGGTGGTTTAAATGGTACCAATCAGATCTGTGCCAAATCAGTTCTTGCTCAAATTATGGTCATTGTTTTCATCAGGGTCGAGGAGGACTCTATGGATGTTACTCCTAGGAGAATTTCTGTCAGTGAGTTGTTGGAATTCACTGACAAAAATCTGAATGAAGGTAGCTCCATACATTTTTGCCAAAACTTAGTCAACGAGGTCATGGATGCTAGTGAAGGCATTCCTGATACGAATCAATTCATGGATACTTCACAGCAATTGCAGAATGGAAATGCTCTGGAAAAAGCTGATCACGAGGGTGAATCTGGGGAAGCGGAAAATAACAACGGAGTTGAGTCAGATAGTGGAAGTAAGATTAGGGAGGATGGGTTTCTTCTTTTTAAGAATTTGTGTAAACTGTCGATGAAATTTTCATCACAGGATAACCCTGACGATCAAATCCTCTTGAGGGGGAAAGTTTTGTCCTTGGAGCTGCTAAAAGTGATTATGGAAAATGGAGGTCCAGTTTGGATCTCCAATGAGAGGCGAGTCATTTCATTTTCTCAGTTTCTCTGCTTATCATTGTTGAAGAACAGTGCGCTGTCTGTTATGGCAATCTTCCAGCTCCAGTGCTCCATTTTCACGAGCTTATTAACAAAATTCAGATCAGGGCTGAAAGCAGAAATTGGTATATTCTTTCCGATGCTTGTCCTCCGTGTTCTCGAGAACGTGCTCCAGCCTAGTTTTTTGCAGAAAATGACTGTCCTTAACTTAGTGGATAAAATATCTCAGGACTCTCAGATTATTGTTGACATTTTTGTCAATTATGACTGTGATGTTGATGCACCAAATATTTTTGAAAGGATTGTCAATGGTCTTTTGAAAACTGCTTTAGGACCTCCTTCTGGTTCAACTACAACTTTGTCTCCAGTACAGGATGTCACATTTCGTCATGAATCTGTTAAATGCTTAGTCAGCATTGTTAGGTCAATGGGAACTTGGATGGATCATCAGCTGAGTTTGGATGATTCGTACCTGCCAAAGAGCTCTGATACTGATAATGTAACAGAGAATCAATCTGCAGTGAATGGAGAAGAAGGAACTGTTGCTGATTCGGAGCTCCATCCAGAATTAAATTCTGAATTTTCTGATGCTGCTACACTTGAACATCGTCGAGCTTACAAAATTGAACTCCAGAAAGGTATCTCCTTATTTAATAGAAAACCATCCAAGGGTATTGAGTTTTTGATAAGCACCAAAAAAGTTGATAGATCTCCTGAAGGCGTAGCTTCTTTCATTAAGAACACCAGCGGCCTTAATGAAACCATAATCGGTGATTACCTGGGTGAAAGAGATGAGTTTCCTTTGAAAGTGATGCATGCTTATGTTGATTCATTCAATTTTAAAGAGAAGGATTTCGGTGAAGCCATAAGATTTTTCCTGCGGGGATTTAGGTTACCCGGTGAGGCACAAAAGATTGACCGCATTATGGAGAAGTTCGCTGAGCGATATTGTAAATGCAATCCAAATGCATTTACCAGTGCAGATACTGCCTATGTGCTTGCTTACTCTGTGATAATGCTTAACACGGATGCCCATAATAATATGGTGAAAGATAAGATGTCCAAGGCTGACTTTGTCCGGAACAATCGAGGAATAGATGATGGTCAAGATTTACCTGAGGAGTATCTTGGTGCCCTTTATGATCAAATTGTTAAGAACGAAATAAAGATGAAAGCTGATTCTTCTGCACCGGAGAACAAGCAGCCTAACAGCATTAATAAGTTGTTGGGTTTAGATGGAATACTCAATCTCGTCTCGTGGAAGCAGACAGAAGAAAAGGCATTGGGTGCAAATGGGCTTCTTATTAGGCACATTCAGGAGCAGTTTAAGGCAAAGTCTTCAAAGTCAGAAATTGTTTATCATGCTGTGGCGGATGTGGCAATATTGAGGTTTATGGTGGAGGTCTGCTGGGGTCCTATGCTGGCTGCTTTTAGTGTAACTCTCGACCAAAGCGATGATAGACTAGCTACTTCTCATTGCTTACAGGGATTTCGGCATGCTGTGCATGTTACGGCATTGATGGGTATGCAGACTCAAAGAGACGCTTTTGTGACATCTGTGGCGAAGTTTACTTTTCTTCATTGTGCTGCAGACATGAAGCAAAAAAATGTGGATGCTGTGAAGACAATAATAGCAATTGCGATTGAGGATGGTAACTATCTTCAGGATGCATGGGAACACATATTAACATGCCTCTCCAGAATTGAGCATCTGCAACTATTAGGAGAGGGTGTACCAACTGATGCATCTTTTTTGACAGTATCAAATGAAGGAGAAGAAAAAGCAACCAAATCCCCTGGCCTGTCATCATTGAAGAGAAAAGGAACTCTCCAGAATCCAGCTGTTATGGCTGTTGTTCGTGGTGGTTCATATGACAGCACGTCTCTGGGAATGAGTGCTCCAGGACTGGTAACTCCAGAACAGATTAGTAACTTTATATCAAACTTGAATTTGCTGGATCAGATTGGAACTTTTGAGTTGAATCACGTATTTGCTCATAGCCAAAGGTTGAACAGTGAGGCCATCGTGGCATTTGTGAAGGCTTTATGCAAAGTTTCTGTTTTTGAGTTGCAGTCTCCAACGGATCCTCGTGTATTCAGCCTTACAAAACTTGTTGAGATAGCGCATTACAATATGAATCGCATCAGATTAGTTTGGTCTCGCATATGGAGTGTTCTCTCAGATTTCTTTGTTTCAGTTGGTTTATCAGAAAATCTCTCAGTCGCCATATTTGTGATGGATTCACTGAGGCAGCTTGCTATGAAATTCTTGGAGCGTGAGGAGCTTGCAAATTACAACTTCCAGAATGAATTTTTAAGACCCTTTGTGATTGTTATGCAGAAAAGCAGTTCTACAGAAATTAGGGAATTAATAGTTCGGTGCATTTCACAAATGGTGCTCAGTCGCGTCAGCAATGTGAAATCTGGCTGGAAAAGTGTTTTTATGGTTTTTACAGCTGCCGCTGCGGATGAGAGAAAGAATGTTGTCTTGTTAGCCTTTGAGACAATGGAAAAAATTGTACGCGAATACTTTCCTTATATTACAGAGACAGAGACTGTGACTTTCACTGATTGTGTTAGATGCCTTATCACCTTCACGAATAGCAGATTTAATAGTGATGTTAGCCTCAATGCTATTGCATTTCTGCGCTTTTGTGCGGTGAAACTCGCTGAGGGAGGACTTGTTTGCAATGAGAGGAGCATGGTTGATGGTTCATCCATTCCTTTAAACGAGGATACTTCAAAAGGGGCTATGTTCACTGAGAAAGATGATCACGCCTCTTATTGGGTTCCTTTGCTAACAGGGCTGTCAAAACTAGCTTCTGATCCTAGGTCAGCAATAAAAAAGAGTTCTGTGGAAGTACTTTTTAACATTCTAAAGGATCATGGTCATCTTTTCTCTCGTCAGTTTTGGGTTAGTGTTATGAATACAGTCGTATTTCCTATATACAGTAGTATGCATGACAAGGTGCATATGGAGGATCATAGCTTAATTTCTTCAAGCCCTGCTCATTTTGAAGGAAGCTCATTGGACTCTGAAACTTGTGTTGTGGCAACACAATGCTTAGTAGATCTGTTTATCAGTTTTTTCAATGTAGTGAGATCTCAACTACCAAGTGTGGTTATAATACTGACAAAATTTATAAGAAGTCCTGTTCAGGCTTCTGCTAGCACAGGAGTTGCTGGATTGACACGTTTGGCCAGTGATTTGGGAAGCAGACTGACTGAAGAAGAATGGAGAGAGATTTTTCTAGCTTTAAAGGAAGCAGCTACATTGACAGTGCCTGGATTTATGAAGGCACTCCGAAGCATGGATATCGTTGAGGTGGCTGGAATTTATTCATCCTGCACTGATAATGATGTTCCATCTGAACATGAATTTGCCAATGATGATCTTGAGGATGATAATCTACAAATTGCTTCCTATGTGATTTCCAGAATGAAGAGTCATATTGCCATGGAGCTTCTTATTATTCAGGTCATCACTGATCTTTATACGAAGCACCTCCACTCTTTATCCGCTGGTAACTTATCAATACTTCTCGATATATTTTCCTCCATTGCCGCTCATTCCCTCCAATTAAATTCCGAGACAGTTCTTCAGAAAAAGCTACAAAAAGCTTGTTCCATCTTGGAGCTCTCCTACCCACCAGTGGTTCACTTTGAAAACGAGTCTTACAATAATTACCTCAATTTCCTCCAGCATTTACTTGTTGATAGCCCATCCATCTCTGAGGAAATGAACATAGAATCACAACTTTTGGCAGTATGTGGACAAATTTTGCAGATATACCTAAACTGTACAGGCTCTCAATCTGCTCAACATAAACAAAGCAATCAGCCAGCACGGCATTGGATTCTTCCACTCGGCTCGGCTAAGAAGGAGGAATTGGCTACGAGGACTTCCTTAGTTGTCTCGGCCTTACAAGTATTGATGGACTTGGAAAGTAACTCATTCACGAGGCATGTCTCTCAAATTTTTCCATTGTTAGTAGATCTTGTGAAGAGTGAGCATACTTCTGGAGAAGTTCAACGTGTTTTGAGCAACATTTTTCACTTCTTGTCTCAACCGATTAATTTGACCGCCATTTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACATTTCTGGCCCCGATTTCCGGCTCGTTTCGGCGGCGTTGAGACTCTCCACTCTGAGTTAGTTGGTACAATAGGAGGTGGAACACAGCTAGCTTCTCAGTCTGCATGTTTGAACCTGCTGGGAGTGAAAGGAGCGAACAGAGACAAACCAGGGGCGAATGCGAGATTGCTCGCCACCATTGTTGCTGGGTCTGTTCTTGCAGGAGAGCTCTCTCTCATGTCAGCTCTTGCAGCAGGCCAGCTCGTCAAGAGCCATATGAAATACAACAGATCTAGCAGAGACATAGCCAGCGCAGTTCCCTCTTAA 5511 42.41 MSASQALGGASRCGRVLGPSLDKIIKNAAWRKHSHLVSTCKSALDKLDSLSVSVSSDAGSPLFGLSPSDAEFVLQPLLLALESAYGKVIDPALECAFKLFSLGLFRGEINRPEDYSNDSHPPTALSRIMEAVCKSSALGEEGIELAVLRVLLSAIRSPCVLIRRDCLINVVRTCYNVYLGGLNGTNQICAKSVLAQIMVIVFIRVEEDSMDVTPRRISVSELLEFTDKNLNEGSSIHFCQNLVNEVMDASEGIPDTNQFMDTSQQLQNGNALEKADHEGESGEAENNNGVESDSGSKIREDGFLLFKNLCKLSMKFSSQDNPDDQILLRGKVLSLELLKVIMENGGPVWISNERRVISFSQFLCLSLLKNSALSVMAIFQLQCSIFTSLLTKFRSGLKAEIGIFFPMLVLRVLENVLQPSFLQKMTVLNLVDKISQDSQIIVDIFVNYDCDVDAPNIFERIVNGLLKTALGPPSGSTTTLSPVQDVTFRHESVKCLVSIVRSMGTWMDHQLSLDDSYLPKSSDTDNVTENQSAVNGEEGTVADSELHPELNSEFSDAATLEHRRAYKIELQKGISLFNRKPSKGIEFLISTKKVDRSPEGVASFIKNTSGLNETIIGDYLGERDEFPLKVMHAYVDSFNFKEKDFGEAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPNAFTSADTAYVLAYSVIMLNTDAHNNMVKDKMSKADFVRNNRGIDDGQDLPEEYLGALYDQIVKNEIKMKADSSAPENKQPNSINKLLGLDGILNLVSWKQTEEKALGANGLLIRHIQEQFKAKSSKSEIVYHAVADVAILRFMVEVCWGPMLAAFSVTLDQSDDRLATSHCLQGFRHAVHVTALMGMQTQRDAFVTSVAKFTFLHCAADMKQKNVDAVKTIIAIAIEDGNYLQDAWEHILTCLSRIEHLQLLGEGVPTDASFLTVSNEGEEKATKSPGLSSLKRKGTLQNPAVMAVVRGGSYDSTSLGMSAPGLVTPEQISNFISNLNLLDQIGTFELNHVFAHSQRLNSEAIVAFVKALCKVSVFELQSPTDPRVFSLTKLVEIAHYNMNRIRLVWSRIWSVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIVMQKSSSTEIRELIVRCISQMVLSRVSNVKSGWKSVFMVFTAAAADERKNVVLLAFETMEKIVREYFPYITETETVTFTDCVRCLITFTNSRFNSDVSLNAIAFLRFCAVKLAEGGLVCNERSMVDGSSIPLNEDTSKGAMFTEKDDHASYWVPLLTGLSKLASDPRSAIKKSSVEVLFNILKDHGHLFSRQFWVSVMNTVVFPIYSSMHDKVHMEDHSLISSSPAHFEGSSLDSETCVVATQCLVDLFISFFNVVRSQLPSVVIILTKFIRSPVQASASTGVAGLTRLASDLGSRLTEEEWREIFLALKEAATLTVPGFMKALRSMDIVEVAGIYSSCTDNDVPSEHEFANDDLEDDNLQIASYVISRMKSHIAMELLIIQVITDLYTKHLHSLSAGNLSILLDIFSSIAAHSLQLNSETVLQKKLQKACSILELSYPPVVHFENESYNNYLNFLQHLLVDSPSISEEMNIESQLLAVCGQILQIYLNCTGSQSAQHKQSNQPARHWILPLGSAKKEELATRTSLVVSALQVLMDLESNSFTRHVSQIFPLLVDLVKSEHTSGEVQRVLSNIFHFLSQPINLTAISLSLSLSLSLSLHFWPRFPARFGGVETLHSELVGTIGGGTQLASQSACLNLLGVKGANRDKPGANARLLATIVAGSVLAGELSLMSALAAGQLVKSHMKYNRSSRDIASAVPS 1836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1174528 1188907 + Bpe005396.1 Bpe12g00159 112172

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00159 1836 Pfam Domain of unknown function (DUF1981) 1115 1197 IPR015403 -
Bpe12g00159 1836 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 1756 1763 IPR023076 GO:0004420
Bpe12g00159 1836 Pfam BIG2 C-terminal domain 1514 1711 IPR046455 -
Bpe12g00159 1836 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 1750 1825 IPR002202 GO:0004420|GO:0015936
Bpe12g00159 1836 Pfam Dimerisation and cyclophilin-binding domain of Mon2 14 208 IPR032629 -
Bpe12g00159 1836 Pfam Hydroxymethylglutaryl-coenzyme A reductase 1755 1825 IPR002202 GO:0004420|GO:0015936
Bpe12g00159 1836 Gene3D - 559 639 - -
Bpe12g00159 1836 MobiDBLite consensus disorder prediction 520 538 - -
Bpe12g00159 1836 ProSiteProfiles SEC7 domain profile. 559 746 IPR000904 GO:0005085|GO:0032012
Bpe12g00159 1836 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 1756 1830 IPR009029 GO:0015936|GO:0016616
Bpe12g00159 1836 CDD Sec7 566 748 IPR000904 GO:0005085|GO:0032012
Bpe12g00159 1836 PANTHER BREFELDIN A-INHIBITED GUANINE NUCLEOTIDE-EXCHANGE PROTEIN 4 9 1714 - -
Bpe12g00159 1836 MobiDBLite consensus disorder prediction 267 295 - -
Bpe12g00159 1836 SUPERFAMILY Sec7 domain 563 754 IPR035999 GO:0005085|GO:0032012
Bpe12g00159 1836 Pfam Sec7 domain 567 748 IPR000904 GO:0005085|GO:0032012
Bpe12g00159 1836 Gene3D - 1104 1328 IPR011989 -
Bpe12g00159 1836 Gene3D - 1745 1828 IPR023074 GO:0004420
Bpe12g00159 1836 MobiDBLite consensus disorder prediction 520 539 - -
Bpe12g00159 1836 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 1810 1823 IPR023076 GO:0004420
Bpe12g00159 1836 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 9 1714 - -
Bpe12g00159 1836 SMART sec7_5 563 748 IPR000904 GO:0005085|GO:0032012
Bpe12g00159 1836 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 300 457 IPR032691 -
Bpe12g00159 1836 SUPERFAMILY ARM repeat 1054 1714 IPR016024 -
Bpe12g00159 1836 Gene3D - 640 756 IPR023394 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00159 K18442 ARFGEF, BIG; brefeldin A-inhibited guanine nucleotide-exchange protein - qsu:112002939 2568.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00159 Bpe-Chr12:1174528 Bpe15g00772 Bpe-Chr15:18044931 1.18E-37 dispersed
Bpe02g01891 Bpe-Chr2:20874742 Bpe12g00159 Bpe-Chr12:1174528 9.02E-11 transposed
Bpe02g02053 Bpe-Chr2:22092751 Bpe12g00159 Bpe-Chr12:1174528 2.94E-56 transposed
Bpe14g00888 Bpe-Chr14:6612765 Bpe12g00159 Bpe-Chr12:1174528 0 transposed
Bpe14g00903 Bpe-Chr14:6721619 Bpe12g00159 Bpe-Chr12:1174528 0 transposed
Bpe15g01126 Bpe-Chr15:20319023 Bpe12g00159 Bpe-Chr12:1174528 6.65E-86 transposed
Bpe12g00159 Bpe-Chr12:1174528 Bpe15g00771 Bpe-Chr15:18040714 1.09E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g315 . . . . . Bpe12g00159 . . . Cmo11g01803 . . . . Sed05g2136 Cpe04g00646 Cpe15g00658 Bhi05g01542 Tan02g0540 Cmetu01g0851 Lac12g0438 Hepe02g0345 . . . . . . . . . . . . . . Csa07g00216 . . . Blo13g00462 . . . . . . . . . Cma11g01317 Cma19g00818 Car11g01430 Car19g00635 . . . . . . . . . . . . . . . . Lsi11g01311 . Chy01g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010065 0 1 1 0 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00159 Bpe_Chr12 FPKM 19.876789 21.834194 20.046005 18.378155 22.922966 20.288187 24.258684 12.792379 13.979548 15.905382