Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00160 ATGTCAGGTTCTCGTTTTGCTCACCATCTTCTCGGATCAGAACTTCAACTACAAAGATCATCTCAACCCGACCACCTCTCAGATTGCAAGGACGATTCGCCGGAAAAAGAAGACGGGATAAAGGACATGGGCGATGCAGTGATGAGCAGTTCTTCATCAGGTCGGAGGCCTCGTGGTCGACCGGCGGGCTCCAAAAACAAACCTAAACCGCCGATATTTATCACTCGAGACAGCCCAAATGCTCTCAGATCCCACATTTTGGAAGTTGCTTCAGGCTCCGACATCGTCCAATCGGTTACAAACTACGCCCAGAAGCGCGGTCGTGGAGTCTGCGTTCTCAGCGGGTCCGGCGGCGTCACTAACGTAATCCTCCGGCAGCCATCATCGCCATCAGGTGGTGTAATTACACTTCACGGCAGGTATGAGATATTATCACTCACCGGCACGGCATTGCCTCCTCCAGCGCCGCCTGGGGCTGGCGGCTTGACGGTATACTTGGCGGGAGGTCAAGGTCAGGTGGTGGGAGGAAGCGTCGTGGGACCGCTAGTGGCTTGCGGCTCAGTGGTTCTGATGGCTGCTTCGTTTGCGAATGCAGTTTACGATCGGTTGCCGGTGGAGGACGAGGATCCAGGCATTCAGATTCCTCCAGCATCTGAAACTTCCGGGGTGACAACCGGTGGAGCGCAAGTGGTCGGCGACGGAGGAAGTGGAAGCAGTGGCGGAGTAGGCGTTCCCTTCCACAATCTAGGAGTGAACGTGGGAAATTATGGCTACCCTGGTGATCATGTTTTAGGGTGGAGTGGTTCTGTATCTGCATCAACATCGAGACCGCCATTTTAG 840 54.76 MSGSRFAHHLLGSELQLQRSSQPDHLSDCKDDSPEKEDGIKDMGDAVMSSSSSGRRPRGRPAGSKNKPKPPIFITRDSPNALRSHILEVASGSDIVQSVTNYAQKRGRGVCVLSGSGGVTNVILRQPSSPSGGVITLHGRYEILSLTGTALPPPAPPGAGGLTVYLAGGQGQVVGGSVVGPLVACGSVVLMAASFANAVYDRLPVEDEDPGIQIPPASETSGVTTGGAQVVGDGGSGSSGGVGVPFHNLGVNVGNYGYPGDHVLGWSGSVSASTSRPPF 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1200266 1201105 + Bpe005397.1 Bpe12g00160 112173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00160 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 25 3 270 - -
Bpe12g00160 279 MobiDBLite consensus disorder prediction 1 78 - -
Bpe12g00160 279 CDD DUF296 83 149 IPR005175 -
Bpe12g00160 279 ProSiteProfiles PPC domain profile profile. 79 215 IPR005175 -
Bpe12g00160 279 Gene3D - 82 213 - -
Bpe12g00160 279 PIRSF ESCAROLA 2 279 IPR014476 GO:0003680
Bpe12g00160 279 Pfam Plants and Prokaryotes Conserved (PCC) domain 83 196 IPR005175 -
Bpe12g00160 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 270 IPR014476 GO:0003680
Bpe12g00160 279 MobiDBLite consensus disorder prediction 24 43 - -
Bpe12g00160 279 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 209 - -
Bpe12g00160 279 MobiDBLite consensus disorder prediction 211 236 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00160 Bpe-Chr12:1200266 Bpe05g00865 Bpe-Chr5:21849956 7.45E-69 dispersed
Bpe12g00160 Bpe-Chr12:1200266 Bpe04g01716 Bpe-Chr4:23004462 2.63E-71 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00160 - - tcc:18608390 325.865