Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00163 ATGGTTATTGGATATCCACTTAACAGAGTAAGTAGCATGGACACTGGAGGCAATTCCTTACCTTCCGGACCTGATGCAGTTAAAAGAAAGGTGTGTTACTTCTACGACCCTGAGGTTGGAAATTACTATTACGGCCAGAGTCATCCCATGAAGCCTCATCGCATCAGAATGACCCACGCCCTTCTTGCCCACTACGGATTGCTTCAGCATATGCAGGTTCTCAAGCCTTTTCCTGCAAGGGATAGGGACCTTTGTCGCTTCCATGCTGATGATTATGTATCTTTCCTGAGAAATATTACCCCTGAAACACAACAAGATCAGCTTAGGCAGCTCAAGCGCTTCAATGTTGGAGAGGATTGCCCAGTTTTTGATGGTCTTTACTCTTTCTGCCAAACTTATGCTGGTGGCTCAGTTGGTGGCGCTGTTAAGTTGAACCACAATCTGTGCGATATTGCAGTAAATTGGGCTGGTGGACTACATCATGCTAAGAAGTGTGAGGCTTCCGGTTTTTGCTATGTCAATGATATAGTCCTGGCTATCTTAGAGCTTCTTAAACAGCACGAGCGTGTTTTATATGTGGACATTGATATTCACCATGGAGATGGTGTAGAAGAGGCTTTTTATACAACTGACAGGGTCATGACTGTTTCATTCCATAAATTTGGCGACTATTTTCCTGGTACTGGAGATATACGTGATGTTGGATATGCAAAAGGAAAGTATTATTCTCTCAATGTTCCGCTAGATGATGGCATTGAGGACGAGAGTTATCATTTCTTGTTTAAACCTATAATGGGAAAAGTGATGGAAGTTTTTAAACCTGGTGTTGTGGTCCTTCAATGTGGTGCTGACTCCTTATCTGGAGACAGGCTAGGATGCTTCAATCTTTCCATTAAAGGTCATGCAGAGTGTGTCAGGTACATGAGATCGTTTAATGTTCCTCTATTGCTTCTTGGAGGTGGTGGTTATACTATTCGAAATGTTGCTCGATGCTGGTGCTATGAGTTGTCTTATTTTTTTTATTATCGTTCGCTAACCGTTGTTAACTTGAACTCTCTTACCTGTGAGGCAGATGAAGATCAAGACGATCCAGATGAGAGATGGAATCCAGATTCAGACATGGAAGTTGACGAGGAGAGGTATTTCACGTGTTATATACTCAGTATTTAG 1170 42.39 MVIGYPLNRVSSMDTGGNSLPSGPDAVKRKVCYFYDPEVGNYYYGQSHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRFHADDYVSFLRNITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHNLCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDVGYAKGKYYSLNVPLDDGIEDESYHFLFKPIMGKVMEVFKPGVVVLQCGADSLSGDRLGCFNLSIKGHAECVRYMRSFNVPLLLLGGGGYTIRNVARCWCYELSYFFYYRSLTVVNLNSLTCEADEDQDDPDERWNPDSDMEVDEERYFTCYILSI 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1235131 1237459 + Bpe005400.1 Bpe12g00163 112176

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00163 389 CDD HDAC_classI 34 335 - -
Bpe12g00163 389 PRINTS Histone deacetylase superfamily signature 189 204 IPR000286 -
Bpe12g00163 389 PRINTS Histone deacetylase superfamily signature 157 180 IPR000286 -
Bpe12g00163 389 PRINTS Histone deacetylase superfamily signature 274 284 IPR000286 -
Bpe12g00163 389 Pfam Histone deacetylase domain 48 337 IPR023801 -
Bpe12g00163 389 SUPERFAMILY Arginase/deacetylase 30 356 IPR023696 -
Bpe12g00163 389 PRINTS Histone deacetylase signature 114 131 IPR003084 GO:0004407|GO:0016575
Bpe12g00163 389 PRINTS Histone deacetylase signature 252 270 IPR003084 GO:0004407|GO:0016575
Bpe12g00163 389 PRINTS Histone deacetylase signature 135 155 IPR003084 GO:0004407|GO:0016575
Bpe12g00163 389 PRINTS Histone deacetylase signature 50 67 IPR003084 GO:0004407|GO:0016575
Bpe12g00163 389 PRINTS Histone deacetylase signature 176 192 IPR003084 GO:0004407|GO:0016575
Bpe12g00163 389 PRINTS Histone deacetylase signature 83 101 IPR003084 GO:0004407|GO:0016575
Bpe12g00163 389 PRINTS Histone deacetylase signature 235 248 IPR003084 GO:0004407|GO:0016575
Bpe12g00163 389 PIRSF HDAC_I_euk 13 368 IPR003084 GO:0004407|GO:0016575
Bpe12g00163 389 PANTHER HISTONE DEACETYLASE 15 336 - -
Bpe12g00163 389 PANTHER HISTONE DEACETYLASE 19 15 336 - -
Bpe12g00163 389 Gene3D Histone deacetylase domain 27 383 IPR037138 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00163 K06067 HDAC1_2; histone deacetylase 1/2 [EC:3.5.1.98] - egr:104419065 689.108
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe12g00163 Bpe15g00768 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00264 Bpe-Chr10:9932076 Bpe12g00163 Bpe-Chr12:1235131 2.07E-17 transposed
Bpe11g00877 Bpe-Chr11:6457082 Bpe12g00163 Bpe-Chr12:1235131 1.10E-21 transposed
Bpe12g00495 Bpe-Chr12:10756186 Bpe12g00163 Bpe-Chr12:1235131 1.22E-25 transposed
Bpe12g00526 Bpe-Chr12:11134637 Bpe12g00163 Bpe-Chr12:1235131 6.16E-23 transposed
Bpe12g00667 Bpe-Chr12:12329785 Bpe12g00163 Bpe-Chr12:1235131 3.46E-178 transposed
Bpe12g00163 Bpe-Chr12:1235131 Bpe15g00768 Bpe-Chr15:18017862 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g328 . . . . . Bpe12g00163 . . . Cmo11g01384 Cma02g00311 Cma20g00695 Car02g00192 . . Cpe04g00295 . Bhi05g01087 . . . . . . Cla02g00624 Cam02g0658 Cec02g0661 Cco02g0685 Clacu02g0666 . Cre02g0979 . . . . . Csa07g00228 . Cme01g00073 Blo04g00616 Blo13g00456 . . Bpe15g00768 . Bma03g00653 Bma08g00825 . Cmo02g00305 Cmo20g00687 . . . . . Cpe05g01328 . . . . . . . Cla02g01045 Cam02g1113 Cec02g1118 Cco02g1152 Clacu02g1099 Cmu02g1059 Cre02g1367 Lsi11g01321 . Chy01g00080 Cme11g01011
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000680 1 7 2 3 3 3 4 3 3 2 2 3 4 3 3 4 3 5 4 2 3 3 3 3 3 2 3 5 7 3 99
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00163 Bpe_Chr12 FPKM 35.135063 41.073483 0.970417 0.305778 2.652868 1.921373 2.742575 1.022685 1.076919 0.912472