Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00164 ATGAGTGGCCTGCTTAATGATCCTAAAATTAAGGAATTAGCAGAGGAGATAGCAAAAGATCCTGCATTCAATCAAATGGCTTCGCAGCTGCAGAAAACTTTTCAAGGACCAACAGTTGAGCAGGGAATCCCGCAGTATGATCCACAACAATATTTTTCCACAATGCAACAGGTCATGCAGAATCCTCAATTTATGTCTATGGCCGAGCAGCTTGGTAAAACATTAATTCAGAGTCCATCAATGTCTAGCGTGCTAGAGACTTTTGCAAATCCACCGGTTAATCAGCTTGAAGAACGAATGGCACGGATTAGAGACGATCCTTCCTTTAAGTCTATTTTGGAAGAGATAGAGAACAACGGCCCAGCTGCTATGATGAAGTACTGGAATGACAAAGACGTTATGCAGAAATTAGGTGAAGCAATGGGTCTCGCAGTTATTGAAGATGCAGAAGCTGCTGCTGACAACTCTGGCTTGGATGATTCTGAAGAACTGGTAAATGAAGACGAGTCAATAGTTCATAATACTGCTAGTGTTGGCGACGTTGAGGGATTGAAAGCTGCACTGGCTTCTGGTGCCAACAAGGACGAAGAAGATTCAGAAGGGCGAACAGCACTGCATTTTGCATGTGGCTATGGCGAGGTAAAGTGTGTTCAGATTCTGCTCGAGGCTGGAGCTGCTGCGGATGCTTTGGACAAGAACAAGAACACGGCACTTCATTATGCAGCCGGTTATGGCAGAAAGGAGTGTGTGGCTCTTCTGCTGGAGAATGGAGCTGCTGTCACCCTCCAAAATATGGATGGAAAAACTCCTATTGATGTTGCAAAGCTAAACAACCAACACGAAGTACTAAAACTGCTCGAGAAGGATGCCTTCCTGTAA 879 44.71 MSGLLNDPKIKELAEEIAKDPAFNQMASQLQKTFQGPTVEQGIPQYDPQQYFSTMQQVMQNPQFMSMAEQLGKTLIQSPSMSSVLETFANPPVNQLEERMARIRDDPSFKSILEEIENNGPAAMMKYWNDKDVMQKLGEAMGLAVIEDAEAAADNSGLDDSEELVNEDESIVHNTASVGDVEGLKAALASGANKDEEDSEGRTALHFACGYGEVKCVQILLEAGAAADALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNNQHEVLKLLEKDAFL 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1239026 1241301 - Bpe005401.1 Bpe12g00164 112177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00164 292 Gene3D - 77 144 - -
Bpe12g00164 292 Pfam Ankyrin repeats (3 copies) 175 264 IPR002110 GO:0005515
Bpe12g00164 292 Gene3D - 160 237 IPR036770 -
Bpe12g00164 292 ProSiteProfiles Ankyrin repeat profile. 200 232 IPR002110 GO:0005515
Bpe12g00164 292 ProSiteProfiles Ankyrin repeat region circular profile. 200 232 - -
Bpe12g00164 292 PANTHER - 1 292 - -
Bpe12g00164 292 Pfam STI1 domain 99 142 IPR041243 -
Bpe12g00164 292 ProSiteProfiles Ankyrin repeat profile. 233 265 IPR002110 GO:0005515
Bpe12g00164 292 SMART ANK_2a 233 262 IPR002110 GO:0005515
Bpe12g00164 292 SMART ANK_2a 200 229 IPR002110 GO:0005515
Bpe12g00164 292 SMART ANK_2a 167 196 IPR002110 GO:0005515
Bpe12g00164 292 ProSiteProfiles Ankyrin repeat region circular profile. 233 264 - -
Bpe12g00164 292 SUPERFAMILY Ankyrin repeat 165 286 IPR036770 -
Bpe12g00164 292 Gene3D - 238 289 IPR036770 -
Bpe12g00164 292 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 1 292 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00164 - - - pvy:116145673 479.559
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe12g00164 Bpe15g00922 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00164 Bpe-Chr12:1239026 Bpe15g01241 Bpe-Chr15:20954241 3.43E-08 dispersed
Bpe12g00137 Bpe-Chr12:1021169 Bpe12g00164 Bpe-Chr12:1239026 1.73E-13 transposed
Bpe12g00164 Bpe-Chr12:1239026 Bpe15g00767 Bpe-Chr15:18012290 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g332 . . . . . Bpe12g00164 . . . . Cma02g00314 . Car02g00195 Car20g00595 Sed01g0615 . . Bhi05g01518 Tan02g0522 Cmetu05g1570 Lac12g0422 Hepe02g0332 . . Cla02g00315 Cam02g0322 Cec02g0323 Cco02g0325 Clacu02g0314 Cmu02g0313 Cre02g0645 Cone12ag1280 Cone8ag1351 Cone3ag1265 . . Csa07g00229 . . Blo04g00617 Blo13g00584 . . Bpe15g00922 . Bma03g00654 Bma08g00700 . Cmo02g00308 . . . . . . Cpe05g01326 . . . . . . . Cla02g01042 . . . . . . Lsi11g01322 . Chy01g00551 Cme11g01009
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002762 0 3 2 2 2 2 2 1 1 1 2 1 1 2 2 1 1 3 2 1 2 2 2 2 2 2 2 7 3 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00164 Bpe_Chr12 FPKM 86.747383 98.405113 22.720053 26.011293 22.085367 19.650076 22.11969 67.713524 66.244751 66.828629