Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00169 ATGGTTTATTGCCGTTCTGATGCTGCCTGTTTGTGCTTATCATGCGATCGGAACGTCCACTCTGCGAACGCACTCTCGAGGCGACACACAAGAACACTATTATGTGAAAAGTGCAATTTACAGCCTGCGTTAGTAAGATGTGTTGAAGATGGAATCAATCTCTGTCAGAATTGTGATTGGCTGTGCCACAACTCGGCTACTTCTTCGTCGCATAAGAAGGAAACGATCAATTGCTACGCAGGCTGCCCATCGGCTTCTGAGCTTTCTTCTATTTGGTCATTTGTTTTAGATTTGCCGACTGTGGGAGACGCATGTGACCAAGAGTTGGAATTAATGAGAGGCCATCGAGAAAATAATGATTCTCGAGATGCATACGACTTGGTGGATAAGTCAGGTATTTGGGTTGGCCCTTCTTTAATATCGACACTTAATTTTGCTCCACGGGGGTTAGAGCATTCAGGTGGATCCGTAAATATAAATTTTCCAAAGTTATGCTGTCCCGGAACAAAAGGTATTGAAACCTGTGAATTTGGCGATCTCTACGAGGATTTGGATTTGAGTCTCGAAAATTACGATGAACTGTTTGGCGTAGCCAATAATTCTGATGATCTTCTGGAGAATGGAGGGATCGATAGCTTGTTTGGGACGAAGGACATGTCTACTGCTGATTCCAATGGCTGCGCTGCTGTTGCTACTGAGGTTATATTACAAAATTTAGATGTGCTGAACTTGAGTGTTCTTCTCAAGGGGTCTTCTGGTGGATTTATGAATACAATACAGCCAGCAAGCAGTAATGCTGCATCTGCAGATTCCATCATGAGTACTAAAACAGACTCAATTCTTTGTTGTAATACAAGGCAACCACTTTCTCCTCTTCCATTTTCCGGCCCCACAGGAGAAATTAAGGGAGGTGGAGATCATCCCGATTCTGGACTTTCGGCGATGCTTTTGATGGGGGAGCCTCCATGGTGTCCACCCTGTCCCGACACTTCGTTCCAATCCGCTAATCGTAGCAATGCCGTTATGCGGTACATGGAGAAGAAAAAGACCCGAAAGTTCGAGAAAAAAGTCAGGTACGAGTCTCGAAAAGCAAGGGCGGACGTGAGGAGGCGTGTGAAGGGTCGGTTCATCAAAGCTGGAGATGCTTACGATTATGATCCATTGTGCGAAACCAGAAGCTACTAG 1185 45.15 MVYCRSDAACLCLSCDRNVHSANALSRRHTRTLLCEKCNLQPALVRCVEDGINLCQNCDWLCHNSATSSSHKKETINCYAGCPSASELSSIWSFVLDLPTVGDACDQELELMRGHRENNDSRDAYDLVDKSGIWVGPSLISTLNFAPRGLEHSGGSVNINFPKLCCPGTKGIETCEFGDLYEDLDLSLENYDELFGVANNSDDLLENGGIDSLFGTKDMSTADSNGCAAVATEVILQNLDVLNLSVLLKGSSGGFMNTIQPASSNAASADSIMSTKTDSILCCNTRQPLSPLPFSGPTGEIKGGGDHPDSGLSAMLLMGEPPWCPPCPDTSFQSANRSNAVMRYMEKKKTRKFEKKVRYESRKARADVRRRVKGRFIKAGDAYDYDPLCETRSY 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1275341 1277089 + Bpe005406.1 Bpe12g00169 112182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00169 394 CDD Bbox1_BBX-like 2 34 - -
Bpe12g00169 394 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 394 - -
Bpe12g00169 394 ProSiteProfiles CCT domain profile. 337 379 IPR010402 GO:0005515
Bpe12g00169 394 Pfam CCT motif 337 379 IPR010402 GO:0005515
Bpe12g00169 394 ProSiteProfiles Zinc finger B-box type profile. 30 76 IPR000315 GO:0008270
Bpe12g00169 394 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 394 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe07g00668 Bpe12g00169 CCT
Bpe12g00169 Bpe15g00764 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00169 Bpe-Chr12:1275341 Bpe14g00696 Bpe-Chr14:5459494 3.81E-64 dispersed
Bpe12g00169 Bpe-Chr12:1275341 Bpe15g00764 Bpe-Chr15:17989759 1.12E-17 wgd
Bpe12g00169 Bpe-Chr12:1275341 Bpe07g00668 Bpe-Chr7:13370606 1.38E-142 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22172 PF06203 CCT 2.50E-16 CL0281 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00169 - - jre:109000761 494.967