Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00212 ATGGAATGGACTAGAGGCAAAGTCATTGGCCAGGGCTCATCGGCCACCGTCTCTCTTGCCACCTCTCGCCGGACGGGTCAAGTTTTTGCGGTGAAAACGGCAGAGCTGGGTGTTTCCCAATTCTTACAAACGGAGCAGGAAATTCTATCTTCTTTGAGACATCCCAGAGTGGTTGGGTACCGAGGGTGGGATGTTACTACGGAGAACGGAAAGTTTTTTTACAATCTGTTTATGGAGTTGGCGCCGGAGGGAACGCTCACCGATGAAATTCACCGGCGAGGTGATGTACTGAACGAGTCTAAGATCGGATTTTTCACTTGGCAAATATTGCAGGGGCTGGAGTATTTACACTCACAATGCTTGGTGCATTGCGACATCAAGAGTCGAAATATCTTGATTTGTGATGATGGGGCGAAAATTGCAGATTTTGGCTCCTCAAAGCGGGCGGAGGAGGCGGCTGTGCGAGGCGGAACACCTATGTTCATGGCGCCGGAGGTGGTGCGGGGGGAGGGGCAGGGGTGGGAAAGTGACATCTGGGGTCTCGGATGTATATTAATAGAAATGGCCACCGGAGGTTTGCCGTGGCCTTGTATTAAAGACAGCCCATTATCAGTTCTGTACCGAGTTGGATATTCCGGCGAGTCGCCGGCGGTTCCGAGCATTTTATCGGACCAGGGAAGGGATTTTTTGGAGAAGTGCTTGAGGAAGAATCCTAAGAAAAGGTGGACAGCTGCGCAACTTCTCAGACACTCCTTTCTTAAAGAATTCAGCTCCGGCGAAAATCGATGTCAAAAATCTTATTCTATCTCTCCGACGAGTACTTTAGAACAGAGCATTTGGAGGTCATCGGAAGAGTTGGAGAATCACAGTGATGTTGCCGATGATAGGATCAGACGATTGTCGTTGTTTTCAGGGGAGCCAGAATGGAAGGGAGACGAGAATTGGATCGGAGTCAGGGGAGAAGAAGTTAACTTGGAGGAGGAGAAATCGTGTTCTGAATTCTCAGAAAACAACAATCTCGACGTCAATTATTCAGTAAACAGTAGATTTTTAGAAGATTACGCAGTAATTAGTGAACAAAGTTGTAAGAAAGGCATAGCCAAATCATCAGTTTCTTCAAATTCAAGCTTTTTATGA 1137 47.41 MEWTRGKVIGQGSSATVSLATSRRTGQVFAVKTAELGVSQFLQTEQEILSSLRHPRVVGYRGWDVTTENGKFFYNLFMELAPEGTLTDEIHRRGDVLNESKIGFFTWQILQGLEYLHSQCLVHCDIKSRNILICDDGAKIADFGSSKRAEEAAVRGGTPMFMAPEVVRGEGQGWESDIWGLGCILIEMATGGLPWPCIKDSPLSVLYRVGYSGESPAVPSILSDQGRDFLEKCLRKNPKKRWTAAQLLRHSFLKEFSSGENRCQKSYSISPTSTLEQSIWRSSEELENHSDVADDRIRRLSLFSGEPEWKGDENWIGVRGEEVNLEEEKSCSEFSENNNLDVNYSVNSRFLEDYAVISEQSCKKGIAKSSVSSNSSFL 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1687300 1688436 + Bpe005453.1 Bpe12g00212 112225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00212 378 CDD STKc_MAPKKK 2 253 - -
Bpe12g00212 378 SUPERFAMILY Protein kinase-like (PK-like) 3 283 IPR011009 -
Bpe12g00212 378 Gene3D Transferase(Phosphotransferase) domain 1 2 302 - -
Bpe12g00212 378 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 344 - -
Bpe12g00212 378 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe12g00212 378 Pfam Protein kinase domain 4 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe12g00212 378 SMART serkin_6 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe12g00212 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Bpe12g00212 378 PANTHER MAP KINASE KINASE KINASE 1 344 - -
Bpe12g00212 378 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00555 Bpe-Chr11:4261331 Bpe12g00212 Bpe-Chr12:1687300 1.83E-95 dispersed
Bpe12g00212 Bpe-Chr12:1687300 Bpe03g00531 Bpe-Chr3:25426126 5.45E-65 dispersed
Bpe12g00212 Bpe-Chr12:1687300 Bpe07g00623 Bpe-Chr7:12947094 6.25E-115 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63618 PF00069 Pkinase 5.30E-57 CL0016 Bpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00212 K20716 - qsu:112039629 386.726