Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00248 ATGGCCAGGTTCCTCGAGAGACTATCATTTGGGCTGTGGATTGCGACAGTGAGCTTGCTGCTGTTGGGAAATAGTTTGGTCGAGTCCGCAAATCTTAGGCACAATGTCTCATCGGCGCATTGGCTTCCCGCTACAGCCACTTGGTACGGAAGCCCAGAAGGCGACGGAAGCGACGGAGGAGCGTGTGGGTATGGAAATTTAGTGGATGTGAAGCCATTGAGGGCAAAGGTAGGCGCGGTGAGCCCAGTTTTGTTCAAGAATGGCGAGGGCTGCGGAGCTTGCTTCAAGGTAAAGTGCTTGGACCAAGCCATATGCACTAGACGAGCCGTGACCATAATCGTGACAGACGAGTGCCCCGGTGGATACTGTGCCGGTGGCCGCACCCACTTCGACCTCAGTGGCGCCGCCTTCGGCCGCATGGCTGTATCCGGTGAAAGTGGGCACCTCAGGAACCGAGGGGAAATCCCAGTCATCTACAAAAGGACTCAATGCAAATATCCCGGCAAGAACATAGCTTTCCACGTGAATGAAGGTTCGACAGATTACTGGTTCTCGCTCCTGGTTGAGTTCGAGGATGGCGATGGAGATATTGGATCAATGCACATAAGAGAAGCAAGCTCTGGTATATGGTTGGAGATGAATCATCTATGGGGTGCGAATTGGTGTATTATCGGAGGGCCTCTAAAAGGGCCATTTTCGGTGAAACTTAAGACATTGTCGACGGCCAGAACTCTATCAGCCAGAGACGTGATTCCAAGCAACTGGTCGCCTAAAGCCACTTATCCCTCTCGATTGAAATTCGTCTCCTAA 810 52.22 MARFLERLSFGLWIATVSLLLLGNSLVESANLRHNVSSAHWLPATATWYGSPEGDGSDGGACGYGNLVDVKPLRAKVGAVSPVLFKNGEGCGACFKVKCLDQAICTRRAVTIIVTDECPGGYCAGGRTHFDLSGAAFGRMAVSGESGHLRNRGEIPVIYKRTQCKYPGKNIAFHVNEGSTDYWFSLLVEFEDGDGDIGSMHIREASSGIWLEMNHLWGANWCIIGGPLKGPFSVKLKTLSTARTLSARDVIPSNWSPKATYPSRLKFVS 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2317539 2318984 - Bpe005492.1 Bpe12g00248 112261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00248 269 PANTHER EXPANSIN-B3 27 268 - -
Bpe12g00248 269 PRINTS Major pollen allergen Lol pI signature 239 256 IPR005795 GO:0005576|GO:0019953
Bpe12g00248 269 PRINTS Major pollen allergen Lol pI signature 173 188 IPR005795 GO:0005576|GO:0019953
Bpe12g00248 269 PRINTS Major pollen allergen Lol pI signature 189 204 IPR005795 GO:0005576|GO:0019953
Bpe12g00248 269 PRINTS Major pollen allergen Lol pI signature 119 134 IPR005795 GO:0005576|GO:0019953
Bpe12g00248 269 PRINTS Major pollen allergen Lol pI signature 79 90 IPR005795 GO:0005576|GO:0019953
Bpe12g00248 269 PRINTS Major pollen allergen Lol pI signature 141 156 IPR005795 GO:0005576|GO:0019953
Bpe12g00248 269 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576
Bpe12g00248 269 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Bpe12g00248 269 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576
Bpe12g00248 269 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576
Bpe12g00248 269 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
Bpe12g00248 269 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576
Bpe12g00248 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 263 IPR007117 -
Bpe12g00248 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 169 IPR007112 -
Bpe12g00248 269 Pfam Expansin C-terminal domain 171 252 IPR007117 -
Bpe12g00248 269 Gene3D - 25 164 IPR036908 -
Bpe12g00248 269 PANTHER EXPANSIN-LIKE PROTEIN B1 27 268 - -
Bpe12g00248 269 SMART dpbb_1 77 159 IPR007112 -
Bpe12g00248 269 SUPERFAMILY Barwin-like endoglucanases 35 168 IPR036908 -
Bpe12g00248 269 Gene3D - 165 264 IPR036749 -
Bpe12g00248 269 Pfam Lytic transglycolase 79 158 IPR009009 -
Bpe12g00248 269 SUPERFAMILY PHL pollen allergen 169 262 IPR036749 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe07g00556 Bpe12g00248 CCT
Bpe12g00248 Bpe14g00659 CCT
Bpe12g00248 Bpe15g00684 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00248 Bpe-Chr12:2317539 Bpe13g00776 Bpe-Chr13:14224068 7.79E-69 dispersed
Bpe12g00248 Bpe-Chr12:2317539 Bpe14g00659 Bpe-Chr14:5299134 2.13E-142 wgd
Bpe12g00248 Bpe-Chr12:2317539 Bpe15g00684 Bpe-Chr15:17500524 8.83E-179 wgd
Bpe12g00248 Bpe-Chr12:2317539 Bpe07g00556 Bpe-Chr7:12068382 5.28E-141 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00248 K20628 - csv:101202998 441.425