Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00255 ATGGCAGATGGACCACTGTATCCATCAATTTATCAAAAGATATCTGGGAAGTCCTACCTGATTGGTAGAATCTCTCCCAACTTCCAGACTAGGGATTATTCTTCAACTGGTGCATATCTCAATGGAAGTCTGCAGAGTCCTCTTCGTCCAGCCTTCCAAGGCTCTGGTTTGGCTGTTGCCTCATCAATTTCTTCCATTTATGTACAAGCTCCGGCAGAGAAAGGTTTACAAGGCTTTCTTATTGATTTTCTAATGGGAGGGGTGTCTGCTGCCGTTTCCAAATCAGCTGCTGCTCCCATAGAGCGAGTTAAATTGCTTATTCAAAATCAAGATGAGATGATCAAAGCTGGTCGCTTATCTGAGCCTTATAAGGGAATTACTGATTGCTTTGCAAGAACTGTTAAGGATGAAGGCGTCTTAGCTCTTTGGAGAGGGAACAGCACTAATGTCATCAGATATTTCCCAACACAGGCCTTGAATTTTGCTTTCAAGGATTACTTCAAGAGGCTGTTCAACTTCAAAAAAGACAGAGATGGTTACTGGAAATGGTTTGCTGGGAACTTGGCATCTGGTGGCGCCGCTGGTGCTTCTTCTCTTTTGTTTGTTTATTCCTTGGACTATGCTAGAACACGTCTGGCAAATGATGCCAAGTCTGCTAAAAAGGGTGGCGAAAGACAGTTTAATGGTCTAATTGATGTTTACAAGAAAACACTTAAATCGGATGGCATTGCTGGACTTTATCGTGGCTTTAACATCTCATGCATTGGAATTATTGTGTACCGTGGGCTTTATTTTGGAATGTATGACTCTCTGAAACCGGTTGTTCTGGTTGGTGGACTAGAGGACAGTTTCCTTGCTAGTTTCTTGCTTGGATGGGGTATCACAATAGGTGCAGGATTGGCCTCTTACCCGATCGACACTGTCCGAAGAAGGATGATGATGACCTCCGGAGAAGCTGTAAAGTACAAAAGCTCAATGGACGCATTCAACCAAATCGTCCAGAAAGAAGGTGCTAAGTCCCTCTTCAAAGGTGCCGGAGCAAACATATTGCGTGCTGTTGCTGGTGCTGGTGTGCTAGCTGGCTATGATAAGCTGCAGGTTCTCGTGTTTGGCAAGAAATACGGATCTGGGGGCGGTGGTTAG 1143 44.53 MADGPLYPSIYQKISGKSYLIGRISPNFQTRDYSSTGAYLNGSLQSPLRPAFQGSGLAVASSISSIYVQAPAEKGLQGFLIDFLMGGVSAAVSKSAAAPIERVKLLIQNQDEMIKAGRLSEPYKGITDCFARTVKDEGVLALWRGNSTNVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKSAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFNISCIGIIVYRGLYFGMYDSLKPVVLVGGLEDSFLASFLLGWGITIGAGLASYPIDTVRRRMMMTSGEAVKYKSSMDAFNQIVQKEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVLVFGKKYGSGGGG 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2418066 2420473 + Bpe005498.1 Bpe12g00255 112268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00255 380 Pfam Mitochondrial carrier protein 79 174 IPR018108 -
Bpe12g00255 380 Pfam Mitochondrial carrier protein 181 274 IPR018108 -
Bpe12g00255 380 Pfam Mitochondrial carrier protein 283 370 IPR018108 -
Bpe12g00255 380 ProSiteProfiles Solute carrier (Solcar) repeat profile. 77 170 IPR018108 -
Bpe12g00255 380 Gene3D Mitochondrial carrier domain 80 375 IPR023395 -
Bpe12g00255 380 ProSiteProfiles Solute carrier (Solcar) repeat profile. 182 274 IPR018108 -
Bpe12g00255 380 SUPERFAMILY Mitochondrial carrier 78 364 IPR023395 -
Bpe12g00255 380 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 5 379 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Bpe12g00255 380 ProSiteProfiles Solute carrier (Solcar) repeat profile. 282 368 IPR018108 -
Bpe12g00255 380 PRINTS Mitochondrial carrier protein signature 82 95 IPR002067 GO:0055085
Bpe12g00255 380 PRINTS Mitochondrial carrier protein signature 291 313 IPR002067 GO:0055085
Bpe12g00255 380 PRINTS Mitochondrial carrier protein signature 95 109 IPR002067 GO:0055085
Bpe12g00255 380 PRINTS Mitochondrial carrier protein signature 247 265 IPR002067 GO:0055085
Bpe12g00255 380 PRINTS Mitochondrial carrier protein signature 145 165 IPR002067 GO:0055085
Bpe12g00255 380 PRINTS Mitochondrial carrier protein signature 197 215 IPR002067 GO:0055085
Bpe12g00255 380 PRINTS Adenine nucleotide translocator signature 123 144 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Bpe12g00255 380 PRINTS Adenine nucleotide translocator signature 182 195 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Bpe12g00255 380 PRINTS Adenine nucleotide translocator signature 156 168 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Bpe12g00255 380 PRINTS Adenine nucleotide translocator signature 79 91 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Bpe12g00255 380 PRINTS Adenine nucleotide translocator signature 287 303 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Bpe12g00255 380 PANTHER ADP,ATP CARRIER PROTEIN 1, MITOCHONDRIAL-LIKE 5 379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00255 K05863 SLC25A4S, ANT; solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31 - tcc:18608735 606.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00545 Bpe-Chr3:25727431 Bpe12g00255 Bpe-Chr12:2418066 0 dispersed
Bpe06g00632 Bpe-Chr6:17099667 Bpe12g00255 Bpe-Chr12:2418066 0 dispersed
Bpe11g00092 Bpe-Chr11:633404 Bpe12g00255 Bpe-Chr12:2418066 1.49E-132 dispersed
Bpe12g00255 Bpe-Chr12:2418066 Bpe13g00317 Bpe-Chr13:11043411 3.27E-129 dispersed
Bpe12g00255 Bpe-Chr12:2418066 Bpe10g00552 Bpe-Chr10:12565248 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g276 . . . . Bpe12g00255 . . Bma08g00567 . . . . . . Sed05g1942 Cpe15g00812 . Bhi05g01964 Tan02g0207 Cmetu03g1926 Lac12g0737 Hepe02g0128 . . . . . . . . . . . . . . . . Cme01g00300 . Blo13g00360 . Bda15g00897 . . . . . . . . Cma19g00993 . . . . . . . . . . . . . . . . . . Lsi11g01699 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe08g00393 CCT,ECH 1 411 Antiporters AT5G46110 76.0 2.7e-169 591.7
Bpe01g00445 CCT,ECH 1 406 Antiporters AT5G46110 76.6 3.5e-169 591.3
Bpe08g01134 CCT,ECH 1 396 Antiporters AT5G54800 75.8 6.7e-162 567.0
Bpe11g00531 CCT,ECH 1 389 Antiporters AT5G54800 75.7 1.3e-160 562.8
Bpe05g00931 . 92 415 Antiporters AT5G54800 53.6 4.9e-88 321.6
Bpe11g01514 . 20 402 Antiporters AT3G01550 60.4 6.2e-120 427.6
Bpe12g00653 . 55 414 Antiporters AT3G01550 59.9 8.1e-112 400.6
Bpe07g00843 CCT,ECH 56 418 Antiporters AT3G01550 58.0 5.8e-110 394.4
Bpe13g00243 CCT,ECH 53 413 Antiporters AT3G01550 58.9 1.1e-108 390.2
Bpe12g00653 . 3 418 Antiporters AT5G33320 68.3 8.1e-150 526.9
Bpe13g00243 CCT,ECH 1 416 Antiporters AT5G33320 67.9 1.9e-146 515.8
Bpe07g00843 CCT,ECH 3 420 Antiporters AT5G33320 66.4 5.1e-144 507.7
Bpe11g01514 . 75 402 Antiporters AT5G33320 62.5 1.9e-114 409.5
Bpe11g00531 CCT,ECH 43 392 Antiporters AT1G61800 78.6 1.1e-157 553.1
Bpe08g01134 CCT,ECH 20 394 Antiporters AT1G61800 75.3 5.2e-157 550.8
Bpe05g00931 . 117 418 Antiporters AT1G61800 52.3 5.3e-85 311.6
Bpe05g00931 . 22 427 Antiporters AT5G17630 69.3 7.2e-154 540.4
Bpe11g00531 CCT,ECH 85 389 Antiporters AT5G17630 55.5 7.8e-92 334.3
Bpe08g01134 CCT,ECH 87 393 Antiporters AT5G17630 55.5 3.0e-91 332.4
Bpe07g00693 BCT 68 447 Antiporters AT3G13320 76.3 9.3e-160 560.1
Bpe14g00769 BCT 75 443 Antiporters AT3G13320 76.4 1.8e-155 545.8
Bpe06g00821 . 57 426 Antiporters AT3G13320 74.5 2.1e-148 522.3
Bpe11g00610 . 3 467 Antiporters AT3G13320 63.7 4.0e-147 518.1
Bpe02g00905 . 5 408 Antiporters AT2G38170 74.3 1.6e-165 579.3
Bpe02g00905 . 4 376 Antiporters AT3G51860 76.3 2.3e-153 538.9
Bpe02g00905 . 12 405 Antiporters AT5G01490 62.4 1.1e-136 483.4
Bpe07g00693 BCT 68 443 Antiporters AT1G55720 74.8 1.2e-151 533.1
Bpe14g00769 BCT 19 443 Antiporters AT1G55720 67.7 7.5e-149 523.9
Bpe11g00610 . 55 463 Antiporters AT1G55720 68.3 9.2e-139 490.3
Bpe06g00821 . 49 429 Antiporters AT1G55720 68.4 1.0e-137 486.9
Bpe02g00905 . 43 405 Antiporters AT1G55720 50.1 3.5e-90 328.9
Bpe07g00693 BCT 71 443 Antiporters AT1G55730 78.8 3.1e-163 571.6
Bpe14g00769 BCT 19 443 Antiporters AT1G55730 69.7 1.7e-158 555.8
Bpe11g00610 . 14 463 Antiporters AT1G55730 67.3 5.8e-154 540.8
Bpe06g00821 . 57 430 Antiporters AT1G55730 72.6 2.8e-148 521.9
Bpe02g00905 . 43 405 Antiporters AT1G55730 51.8 2.5e-96 349.4
Bpe05g00261 BCT 4 537 Antiporters AT5G27150 78.5 8.5e-240 826.2
Bpe02g01889 . 4 537 Antiporters AT5G27150 78.3 1.1e-239 825.9
Bpe05g00855 . 17 530 Antiporters AT5G27150 71.7 2.7e-209 724.9
Bpe02g01873 BCT 12 531 Antiporters AT5G27150 64.0 4.9e-187 651.0
Bpe06g00499 . 9 526 Antiporters AT5G27150 64.0 1.1e-186 649.8
Bpe11g00564 . 14 539 Antiporters AT5G27150 57.7 4.9e-163 571.2
Bpe05g00261 BCT 5 540 Antiporters AT3G06370 71.1 1.0e-211 733.0
Bpe02g01889 . 5 539 Antiporters AT3G06370 71.4 3.2e-210 728.0
Bpe05g00855 . 17 536 Antiporters AT3G06370 72.3 3.3e-207 718.0
Bpe06g00499 . 24 532 Antiporters AT3G06370 64.9 6.8e-184 640.6
Bpe02g01873 BCT 3 530 Antiporters AT3G06370 58.4 2.5e-170 595.5
Bpe11g00564 . 11 544 Antiporters AT3G06370 57.5 1.0e-155 547.0
Bpe11g00564 . 9 547 Antiporters AT5G55470 69.0 1.6e-211 732.3
Bpe02g01889 . 18 521 Antiporters AT5G55470 59.6 5.0e-168 587.8
Bpe05g00261 BCT 18 521 Antiporters AT5G55470 59.6 1.4e-167 586.3
Bpe05g00855 . 15 517 Antiporters AT5G55470 57.8 4.8e-163 571.2
Bpe02g01873 BCT 21 519 Antiporters AT5G55470 56.6 4.0e-157 551.6
Bpe06g00499 . 1 516 Antiporters AT5G55470 54.7 2.8e-155 545.4
Bpe02g01889 . 10 536 Antiporters AT3G05030 81.4 2.5e-247 851.3
Bpe05g00261 BCT 10 536 Antiporters AT3G05030 80.0 2.9e-243 837.8
Bpe05g00855 . 17 530 Antiporters AT3G05030 73.4 9.6e-215 743.0
Bpe06g00499 . 15 526 Antiporters AT3G05030 66.0 6.0e-193 670.6
Bpe02g01873 BCT 12 531 Antiporters AT3G05030 63.0 7.1e-186 647.1
Bpe11g00564 . 14 539 Antiporters AT3G05030 57.9 5.0e-163 571.2
Bpe14g00572 . 102 681 Antiporters AT1G15460 64.5 1.8e-216 748.8
Bpe11g00130 . 102 638 Antiporters AT1G15460 57.2 4.3e-173 604.7
Bpe04g00785 . 112 663 Antiporters AT1G15460 54.8 6.4e-169 590.9
Bpe04g00785 . 3 668 Antiporters AT3G06450 73.0 4.8e-286 980.3
Bpe11g00130 . 3 700 Antiporters AT3G06450 68.5 2.9e-283 971.1
Bpe14g00572 . 8 667 Antiporters AT3G06450 54.6 4.3e-210 728.0
Bpe11g00130 . 1 706 Antiporters AT2G47160 78.0 0.0e+00 1115.9
Bpe04g00785 . 1 691 Antiporters AT2G47160 74.9 4.4e-308 1053.5
Bpe14g00572 . 8 667 Antiporters AT2G47160 54.9 5.5e-210 727.6
Bpe14g00572 . 8 681 Antiporters AT1G74810 66.1 1.3e-256 882.5
Bpe11g00130 . 7 638 Antiporters AT1G74810 56.7 6.1e-211 730.7
Bpe04g00785 . 1 663 Antiporters AT1G74810 54.4 2.3e-205 712.2
Bpe11g00130 . 1 699 Antiporters AT3G62270 80.1 0.0e+00 1123.2
Bpe04g00785 . 1 690 Antiporters AT3G62270 75.0 1.6e-302 1035.0
Bpe14g00572 . 8 667 Antiporters AT3G62270 56.5 8.0e-214 740.3
Bpe14g00572 . 8 686 Antiporters AT4G32510 68.0 3.2e-268 921.0
Bpe11g00130 . 1 639 Antiporters AT4G32510 54.4 2.7e-203 705.3
Bpe04g00785 . 1 648 Antiporters AT4G32510 54.5 3.9e-202 701.4
Bpe14g00572 . 8 675 Antiporters AT5G25430 67.2 5.6e-257 883.6
Bpe11g00130 . 7 638 Antiporters AT5G25430 55.3 3.9e-202 701.4
Bpe04g00785 . 7 667 Antiporters AT5G25430 52.5 7.9e-195 677.2
Bpe03g00024 . 1 1140 Antiporters AT2G01980 64.0 0.0e+00 1363.2
Bpe03g00024 . 21 737 Antiporters AT1G14660 62.4 3.2e-258 887.9
Bpe02g01537 . 54 592 Antiporters AT5G11800 82.0 3.6e-239 824.3
Bpe14g00259 . 32 617 Antiporters AT5G11800 72.6 2.6e-213 738.4
Bpe08g00517 . 17 644 Antiporters AT5G11800 67.0 7.0e-211 730.3
Bpe02g00485 . 49 644 Antiporters AT5G11800 66.7 7.8e-202 700.3
Bpe07g00962 . 50 572 Antiporters AT5G11800 71.4 2.7e-194 675.2
Bpe07g00962 . 15 566 Antiporters AT5G51710 81.3 2.5e-242 834.7
Bpe02g01537 . 56 563 Antiporters AT5G51710 69.8 1.3e-187 652.9
Bpe08g00517 . 45 616 Antiporters AT5G51710 60.6 2.7e-172 602.1
Bpe14g00259 . 55 590 Antiporters AT5G51710 64.6 7.4e-170 594.0
Bpe02g00485 . 51 617 Antiporters AT5G51710 57.7 1.5e-157 553.1
Bpe02g01537 . 20 592 Antiporters AT2G19600 76.6 2.0e-234 808.5
Bpe08g00517 . 6 641 Antiporters AT2G19600 69.2 1.1e-219 759.6
Bpe14g00259 . 48 618 Antiporters AT2G19600 73.7 5.9e-210 727.2
Bpe02g00485 . 13 645 Antiporters AT2G19600 63.1 8.8e-198 686.8
Bpe07g00962 . 20 563 Antiporters AT2G19600 68.3 7.5e-189 657.1
Bpe07g00366 . 147 565 Antiporters AT1G49810 72.9 7.2e-170 593.6
Bpe05g00376 . 169 583 Antiporters AT1G49810 73.2 2.7e-169 591.7
Bpe07g00366 . 1 580 Antiporters AT3G19490 74.8 1.2e-236 815.8
Bpe05g00376 . 1 599 Antiporters AT3G19490 71.8 1.2e-231 799.3
Bpe08g01206 . 39 460 Antiporters AT5G12860 91.9 2.2e-222 768.5
Bpe15g00017 . 113 583 Antiporters AT5G64280 70.3 7.9e-193 670.2
Bpe07g00326 . 25 495 Antiporters AT5G64280 66.0 2.2e-182 635.6
Bpe15g00017 . 1 583 Antiporters AT5G64290 75.2 5.4e-221 763.8
Bpe07g00326 . 24 495 Antiporters AT5G64290 72.5 7.3e-194 673.7
Bpe08g01206 . 40 461 Antiporters AT5G64290 50.6 2.1e-116 416.4
Bpe12g00255 . 3 379 Antiporters AT4G28390 81.7 2.5e-177 618.2
Bpe06g00632 . 2 389 Antiporters AT4G28390 76.4 1.1e-164 576.2
Bpe10g00552 . 2 390 Antiporters AT4G28390 75.5 2.9e-162 568.2
Bpe03g00545 . 2 385 Antiporters AT4G28390 75.1 1.0e-159 559.7
Bpe11g00092 . 321 710 Antiporters AT4G28390 69.7 1.4e-148 522.7
Bpe13g00317 . 6 305 Antiporters AT4G28390 62.2 3.0e-106 382.1
Bpe10g00552 . 1 391 Antiporters AT3G08580 79.9 3.7e-173 604.4
Bpe06g00632 . 1 390 Antiporters AT3G08580 79.1 1.3e-170 595.9
Bpe03g00545 . 1 386 Antiporters AT3G08580 77.1 1.3e-165 579.3
Bpe11g00092 . 320 711 Antiporters AT3G08580 71.1 1.4e-151 532.7
Bpe12g00255 . 1 378 Antiporters AT3G08580 69.8 2.7e-147 518.5
Bpe13g00317 . 8 299 Antiporters AT3G08580 58.4 2.4e-95 345.9
Bpe10g00552 . 1 391 Antiporters AT5G13490 83.0 8.9e-183 636.3
Bpe06g00632 . 1 390 Antiporters AT5G13490 82.7 7.5e-182 633.3
Bpe03g00545 . 1 386 Antiporters AT5G13490 80.2 9.5e-177 616.3
Bpe11g00092 . 320 711 Antiporters AT5G13490 74.2 1.0e-162 569.7
Bpe12g00255 . 7 378 Antiporters AT5G13490 76.0 5.1e-162 567.4
Bpe13g00317 . 9 305 Antiporters AT5G13490 62.4 9.7e-105 377.1
Bpe13g00317 . 5 301 Antiporters AT5G17400 76.1 1.8e-133 472.2
Bpe10g00552 . 87 382 Antiporters AT5G17400 63.2 3.0e-109 391.7
Bpe12g00255 . 77 370 Antiporters AT5G17400 62.9 3.0e-109 391.7
Bpe06g00632 . 86 376 Antiporters AT5G17400 63.2 3.4e-108 388.3
Bpe03g00545 . 82 372 Antiporters AT5G17400 62.5 4.4e-108 387.9
Bpe11g00092 . 401 700 Antiporters AT5G17400 57.7 1.4e-101 366.3
Bpe05g00238 . 4 541 Antiporters AT1G08960 68.6 2.2e-195 678.7
Bpe04g01360 CCT,ECH 1 550 Antiporters AT5G17850 52.7 4.2e-149 525.0
Bpe04g00505 CCT,ECH 3 485 Antiporters AT5G17860 52.0 2.5e-127 452.6
Bpe11g00146 . 6 527 Antiporters AT2G47600 70.6 3.4e-212 734.6
Bpe06g00730 . 1 306 Antiporters AT1G79900 72.6 1.2e-126 449.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000738 5 6 5 7 5 2 0 3 2 2 1 2 4 3 3 3 2 5 2 2 3 3 3 2 2 3 3 5 5 2 95
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00255 Bpe_Chr12 FPKM 12.480062 16.091276 11.371474 13.838642 21.413977 22.215212 21.985407 19.657806 21.422625 18.921503