Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00269 GCAAAGCCAAAGGTCCGGACGGGGATGAAGAGCGCAGTAGGAGAGATTGTTGAAGTCGATGGTGGTCATATCGTCCGTTCCACTGGCCGAAAAGACCGACACAGCAAGGTCTACACATCGAAAGGCCCTCGCGACCGTCGTGTCCGGCTTTCAGCCCACACCGCAATTCAGTTCTACGACGTTCAAGATCGCTTAGGCTATGATCGACCCAGCAAAGCGGTCGATTGGCTTATAAAAAAGGCAAAGTCCGCTATTGACAAGCTCACTGAGTTACCGCCTTGCTATGCCACCACCATCGCTGCAGATGCTGACACGAATAATGGTGGTAACGAGATGGTAATTTCTGCAGATCAATCGGAGTCATCAGGATACAATTTGCACCTCCAAAGACATTTGGATGAGAATCCAGATAATAATAATTCGAGTTTCGTTCCTCCTCCGCTGTCTTCAGTTGCCCTAACAGACAGTATGAAAACCTTCTTCCCCACAAGCTCTGGGTCGTCCCCCATCAATTTCCAGACCTTCCCACCAGATATACTTTCACGAACCGCAAACCCCATTCAAGATCTTGGCCTTTCTCTCCATACTTCACAAGATCCTGGTCTGATTCACTCTCAGGGAGAGCCAAACCACTCGTCACAGACCGATCAAAACCTTTTCTCCGGCTCGCATCAGGTAGGGTATGAACCGAGTTACCAGAGAATGGCAGCTTGGGGAAATGATAGAGGCGCAGAACATGGAGGTGGGTTTGTTTTCAGCTCGCTGCCAATTTTCGGCCAGGGTGGCTCGGCTGCATTATCACAGAGGGGGCCCCTTCAGTCCAGTTACTCACCTTCTGCGTCATTTCGCGGGTGGAACGATCTTTCCATTGCTGCATCCAAAGACCAGAAGACTCATTCACTTCACCAATCTTCGTTATTTGGTACTCGTTTCGTTTCAGATGGGCTTCATGGCTTTATCATTCCCGGACAGATTCAGGCCGACGAAGACAGCTGTATGGTTTCCGAACGATTGTCATCTTCTTCTATGGACTCCCACCTTTGA 1044 49.71 AKPKVRTGMKSAVGEIVEVDGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLTELPPCYATTIAADADTNNGGNEMVISADQSESSGYNLHLQRHLDENPDNNNSSFVPPPLSSVALTDSMKTFFPTSSGSSPINFQTFPPDILSRTANPIQDLGLSLHTSQDPGLIHSQGEPNHSSQTDQNLFSGSHQVGYEPSYQRMAAWGNDRGAEHGGGFVFSSLPIFGQGGSAALSQRGPLQSSYSPSASFRGWNDLSIAASKDQKTHSLHQSSLFGTRFVSDGLHGFIIPGQIQADEDSCMVSERLSSSSMDSHL 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2698353 2699396 + Bpe005514.1 Bpe12g00269 112282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00269 347 ProSiteProfiles TCP domain profile. 30 88 IPR017887 -
Bpe12g00269 347 PANTHER TRANSCRIPTION FACTOR TCP4 117 346 - -
Bpe12g00269 347 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 6 108 IPR005333 GO:0003700
Bpe12g00269 347 MobiDBLite consensus disorder prediction 202 222 - -
Bpe12g00269 347 PANTHER TRANSCRIPTION FACTOR TCP4 6 108 - -
Bpe12g00269 347 Pfam TCP family transcription factor 29 121 IPR017887 -
Bpe12g00269 347 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 117 346 IPR005333 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00269 - - - qsu:112040076 392.119
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g01004 Bpe-Chr8:12371932 Bpe12g00269 Bpe-Chr12:2698353 3.71E-79 dispersed
Bpe09g00248 Bpe-Chr9:1833461 Bpe12g00269 Bpe-Chr12:2698353 5.10E-71 dispersed
Bpe11g00456 Bpe-Chr11:3548317 Bpe12g00269 Bpe-Chr12:2698353 3.81E-55 dispersed
Bpe12g00269 Bpe-Chr12:2698353 Bpe13g01326 Bpe-Chr13:18426672 7.95E-23 dispersed
Bpe12g00269 Bpe-Chr12:2698353 Bpe15g00176 Bpe-Chr15:12358051 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g203 . . . . Bpe12g00269 . . Bma08g00546 . . Cma02g00071 . Car02g00060 . . . . . . . . . . . . . . . . . . . . . . Lsi10g01578 . . . . Blo13g00343 . Bda15g00925 . . . Bma12g00712 Sed01g0139 Cmo02g00070 . . . . . . Cpe05g01523 Bhi10g01073 Tan05g0714 Cmetu11g1077 . Hepe08g0578 . . . . . . . . . Lsi11g01684 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00011 . 35 261 TCP Transcription Factor Family AT5G23280 54.0 2.3e-54 209.1
Bpe15g00954 . 35 261 TCP Transcription Factor Family AT5G23280 52.7 1.6e-52 203.0
Bpe08g01471 BCT 92 370 TCP Transcription Factor Family AT2G45680 50.3 1.5e-54 210.3
Bpe15g00605 BCT,CCT,ECH 68 170 TCP Transcription Factor Family AT3G47620 82.7 3.3e-41 166.4
Bpe09g00550 . 1 287 TCP Transcription Factor Family AT3G27010 53.1 7.3e-66 247.7
Bpe11g01485 . 6 257 TCP Transcription Factor Family AT3G27010 55.4 5.0e-59 224.9
Bpe15g00954 . 1 259 TCP Transcription Factor Family AT5G08330 51.6 5.9e-60 227.6
Bpe12g00011 . 1 259 TCP Transcription Factor Family AT5G08330 51.8 1.5e-58 223.0
Bpe12g00521 CCT 27 126 TCP Transcription Factor Family AT5G60970 77.2 1.9e-38 156.8
Bpe14g00144 . 29 154 TCP Transcription Factor Family AT3G02150 65.4 9.5e-38 154.5
Bpe15g00176 BCT,CCT,ECH 8 191 TCP Transcription Factor Family AT2G31070 53.8 6.4e-42 168.3
Bpe12g00269 . 14 198 TCP Transcription Factor Family AT2G31070 53.5 2.7e-40 162.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010967 3 0 2 3 2 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 0 0 1 1 1 1 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22182 PF03634 TCP 5.50E-32 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00269 Bpe_Chr12 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0