Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00275 ATGTTTTCCTTGTCCAATCACCGTACGATGAAACTGAAGCAACAAGATGAAGAGATCAAACAGATGTTCATGGGTATCGAAGTCGATGAGGTGAACCTTGACCGTGGCCTCCGTTTTTCGTCGGAGGTTCGTCCGGTTACCGCCGGTGATGACCTTGTCAGTGATGAGGAGGACCTCTTGATTCCTCCTCTGAACTTCTCGGCGGTCGAAGCCGGTATTTTTCGCTCCGGCTTCCCCGATTACGCTAACTTCTCCTTTATTCAAACCCTAGGGCTCCGCTCCATCATATACCTGTGTCCAGAGCCTTATCCTGAGGCAAATATGGAGTTTCTCAAGTCTAATGGGATCACTTTGTATCAATTTGGAATTGAAGGCCATAAGGTGTACATTGATGATTATTTCTTCCTTCAGGAGCCCTATGTAAACATCCCAGACAATGAAATTCGCGAGGCATTGAAAGTTATGATTGACGTCAGGAATCACCCACTTCTAATTCACTGTAACAGAGGAAAGCATCGAACCGGTTGTTTGGTAGGATGCCTGCGTAAAATGCAGAGATGGTGCTTATCATCTGTATTTACCGAGTACCAGCGGTTTGCAGCCGCTAAAGCTAGAGTTTCTGATCAGAGGTTCATAGAAGTTTTTGATGTTTCTACCTTAAACCATCTGCCCATTCCTCTTTCTAGCTTTCTACAGTAA 699 45.21 MFSLSNHRTMKLKQQDEEIKQMFMGIEVDEVNLDRGLRFSSEVRPVTAGDDLVSDEEDLLIPPLNFSAVEAGIFRSGFPDYANFSFIQTLGLRSIIYLCPEPYPEANMEFLKSNGITLYQFGIEGHKVYIDDYFFLQEPYVNIPDNEIREALKVMIDVRNHPLLIHCNRGKHRTGCLVGCLRKMQRWCLSSVFTEYQRFAAAKARVSDQRFIEVFDVSTLNHLPIPLSSFLQ 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2961721 2963675 + Bpe005518.1 Bpe12g00275 112288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00275 232 PANTHER TYROSINE-PROTEIN PHOSPHATASE 11 228 - -
Bpe12g00275 232 PANTHER - 11 228 - -
Bpe12g00275 232 CDD PFA-DSP_Siw14 59 216 - -
Bpe12g00275 232 Gene3D Protein tyrosine phosphatase superfamily 59 219 IPR029021 -
Bpe12g00275 232 Pfam Tyrosine phosphatase family 60 220 IPR004861 -
Bpe12g00275 232 PRINTS Plant and fungal dual specificity phosphatase signature 143 157 IPR020428 GO:0016791
Bpe12g00275 232 PRINTS Plant and fungal dual specificity phosphatase signature 116 130 IPR020428 GO:0016791
Bpe12g00275 232 PRINTS Plant and fungal dual specificity phosphatase signature 97 110 IPR020428 GO:0016791
Bpe12g00275 232 PRINTS Plant and fungal dual specificity phosphatase signature 60 77 IPR020428 GO:0016791
Bpe12g00275 232 ProSitePatterns Tyrosine specific protein phosphatases active site. 165 175 IPR016130 GO:0016311|GO:0016791
Bpe12g00275 232 ProSiteProfiles Dual specificity protein phosphatase domain profile. 65 229 IPR020422 GO:0006470|GO:0008138
Bpe12g00275 232 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 60 216 IPR029021 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe12g00275 Bpe14g00621 CCT
Bpe12g00275 Bpe15g00169 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00275 Bpe-Chr12:2961721 Bpe14g00022 Bpe-Chr14:430444 6.50E-71 dispersed
Bpe12g00275 Bpe-Chr12:2961721 Bpe14g00621 Bpe-Chr14:5131870 6.47E-100 wgd
Bpe12g00275 Bpe-Chr12:2961721 Bpe15g00169 Bpe-Chr15:12184162 4.42E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00275 K18045 - gmx:100814279 287.73