Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00287 AAATCTAAGAAGAAAGAGAAACGCCAGAGAGAGCCAAGGTTTGCTTTTCTGACCAAGAGCGAGATCGATCACCTTGAAGATGGTTACAGATGGAGAAAATACGGACAGAAAGCTGTCAAGAACAGCCCCTACCCAAGAAGCTATTACAGATGCACAACCCAGAAATGCCAAGTGAAAAAGAGAGTGGAGAGGTCATTTCAGGATCCTTCTGTGGTGATAACAACATACGAAGGGCAACATAATCACCAGTGTCCGGCGACCCTCCGTGGAAATGCTCCGGGAATGTTGTCCCCTTCCCTATTTGCGGCTGCGACGGCTTCTGGGCCTCCTTACCTTCCGCCGGATCTATTGTCTCAGCTTTTCCCAACTAATATTTCCCAAGTTGATGCAGGTGGTTCCGTGCTCTATCCAAACATAAATCTTCACCACCACCATCTTCAGTTTCCTGACTATGGCTTACTGCAAGACTTAGTTCCATCGGCATTCCCTCATAAGCAAGGCCCATAA 507 47.53 KSKKKEKRQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCQVKKRVERSFQDPSVVITTYEGQHNHQCPATLRGNAPGMLSPSLFAAATASGPPYLPPDLLSQLFPTNISQVDAGGSVLYPNINLHHHHLQFPDYGLLQDLVPSAFPHKQGP 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3371482 3372058 + Bpe005530.1 Bpe12g00287 112300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00287 168 ProSiteProfiles WRKY domain profile. 20 85 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe12g00287 168 SUPERFAMILY WRKY DNA-binding domain 18 85 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe12g00287 168 PANTHER WRKY TRANSCRIPTION FACTOR 71-RELATED 1 161 - -
Bpe12g00287 168 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 161 IPR044810 GO:0003700
Bpe12g00287 168 SMART WRKY_cls 25 84 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe12g00287 168 Pfam WRKY DNA -binding domain 26 83 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe12g00287 168 Gene3D WRKY domain 10 86 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01122 Bpe-Chr4:9543590 Bpe12g00287 Bpe-Chr12:3371482 4.87E-43 dispersed
Bpe12g00287 Bpe-Chr12:3371482 Bpe14g01092 Bpe-Chr14:8150578 4.24E-50 dispersed
Bpe14g00273 Bpe-Chr14:2772463 Bpe12g00287 Bpe-Chr12:3371482 5.03E-32 dispersed
Bpe12g00287 Bpe-Chr12:3371482 Bpe15g00138 Bpe-Chr15:11523615 2.29E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22184 PF03106 WRKY 3.40E-26 CL0274 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00287 - - zju:107416121 252.292