Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00290 ATGGACTTGAAACACAACATTCGTAATATGTCTGTCATTGCACATGTTGATCATGGAAAGTCAACCCTTACCGATTCACTTGTTGCTGCTGCTGGTATCATTGCTCAGGAGGTTGCAGGTGATGTTCGGATGACAGATACTCGCGCTGATGAGGCAGAACGCGGTATCACTATTAAATCCACTGGAATTTCATTATACTATGAAATGTCGGATGAGTCTTTGAAGAATTACAAGGGAGAGCGAGTTGGAAATGAGTATCTCATAAATCTCATTGATTCTCCTGGACATGTTGACTTCTCCTCTGAGGTTACTGCTGCCCTCCGTATCACTGATGGTGCACTGGTGGTGGTAGATTGCATTGAAGGAGTTTGCGTCCAGACTGAAACTGTCCTCCGTCAAGCTCTTGGAGAGAGAATTAGGCCTGTTTTGACAGTTAACAAGATGGACAGGTGCTTCCTTGAACTTCAGGTTGATGGAGAAGAAGCTTATCAAACATTCCAAAGGGTCATTGAGAATGCAAATGTTATCATGGCCACATATGAGGATCCTCTTCTTGGTGATGTGCAGGTCTATCCTGAGAAAGGAACGGTGGCGTTCTCTGCTGGTTTACATGGTTGGGCTTTCACGCTGACCAACTTTGCAAAAATGTATGCCTCCAAATTCGGGGTTGATGAGTCAAAGATGATGGAGAGGCTTTGGGGTGAAAATTTCTTCGATCCTGCCACTAAAAAATGGACCAGCAAAAATACAGGTTCTGCAACATGCAAGCGTGGATTTGTTCAGTTCTGTTATGAGCCCATCAAGCAAATTATTGCCACTTGCATGAACGACCAGAAGGATAAGCTTTGGCCTATGTTGAAAAAGTTGGGTGTGACTATGAAGTCGGATGAGAAGGAATTGATGGGCAAGGCACTGATGAAACGAGTCATGCAAACTTGGCTACCAGCTAGCACAGCTCTCTTAGAAATGATGGTCTTTCATCTTCCTTCTCCATCAAAGGCCCAGAGGTATCGTGTTGAGAATTTGTATGAGGGCCCTCTTGATGACCAATATGCCACCGCAATTAGAAACTGTGACCCTGATGGACCACTGATGCTCTATGTGTCAAAGATGATTCCGGCATCTGACAAGGGTCGGTTCTTTGCTTTTGGTCGTGTTTTCTCTGGTAGAGTCGCCACGGGTATGAAAGTGAGGATTATGGGGCCTAACTACGTTCCTGGCGAGAAAAAGGACTTGTATGTTAAAAGTGTTCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACTGTTGAGGATGTTCCTTGCGGGAACACAGTGGCCATGGTTGGGCTCGATCAGTTTATTACCAAAAATGCTACTTTGACAAATGAGAAAGAAGTTGATGCACACCCAATTCGAGCAATGAAATTTTCAGTTTCACCAGTTGTACGAGTGGCTGTTCAGTGCAAGGTGGCATCTGACCTTCCCAAGCTTGTTGAAGGACTAAAACGTTTGGCAAAGTCAGATCCTATGGTTGTTTGTTCAATAGAAGAGTCTGGAGAGCACATCATTGCAGGGGCTGGAGAATTGCACCTTGAAATCTGTTTGAAGGATTTGCAGGAGGACTTTATGGGCGGTGCTGAAATTGTGAAATCTGATCCTGTCGTTTCATTCCGTGAGACTGTTCTTGAGAAGTCGTGTCGAACAGTCATGAGTAAGTCTCCCAATAAACATAACCGATTGTACATGGAAGCTCGACCATTGGAAGATGGACTTGCTGAGGCAATCGACGATGGTCGAATTGGCCCAAGAGATGACCCAAAAGTGCGTTCAAAAATTTTGGCTGAGGAATTCGGTTGGGACAAGGATCTTGCCAAAAAGATATGGTGTTTCGGCCCTGAAACAACTGGGCCCAATATGGTTGTGGATATGTGTAAGGGAGTTCAGTATCTCAATGAAATAAAGGACTCCGTCGTGGCCGGATTCCAGTGGGCATCAAAAGAAGGTGCCTTGTGTGAAGAAAACATGAGGGGCATATGTTTTGAAGTTTGCGATGTGGTTCTGCACGCTGATGCAATCCACAGAGGAGGTGGTCAGGTTATCCCTACTGCTAGGAGGGTCATCTATGCTTCCCAAATCACAGCCAAGCCCCGACTTCTCGAGCCAGTGTATTTGGTGGAGATCCAAGCACCTGAGCAGGCACTTGGAGGTATTTATAGCGTTCTTAACCAGAAACGTGGGCATGTGTTTGAAGAAATGCAGAGGCCTGGTACCCCTCTCTATAACATCAAGGCCTACCTCCCTGTGGTTGAGTCCTTTGGTTTTTCGGGCACTCTGCGGGCTGCCACCTCTGGGCAGGCGTTTCCTCAGTGTGTGTTTGATCATTGGGATATGATGTCGTCCGACCCGTTAGAAGCTGGATCCCAGGCTGCCAATCTTGTTGTTGAAATTCGAAAGAGGAAGGGGTTGAAGGAGCAGATGACACCACTCTCTGATTTCGAGGACAAGCTCTAA 2496 45.95 MDLKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMSDESLKNYKGERVGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTSKNTGSATCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLKKLGVTMKSDEKELMGKALMKRVMQTWLPASTALLEMMVFHLPSPSKAQRYRVENLYEGPLDDQYATAIRNCDPDGPLMLYVSKMIPASDKGRFFAFGRVFSGRVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSIEESGEHIIAGAGELHLEICLKDLQEDFMGGAEIVKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEDGLAEAIDDGRIGPRDDPKVRSKILAEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALCEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQITAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEAGSQAANLVVEIRKRKGLKEQMTPLSDFEDKL 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3625686 3628730 - Bpe005536.1 Bpe12g00290 112303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00290 831 CDD EF2_snRNP_III 475 547 - -
Bpe12g00290 831 Pfam Elongation Factor G, domain III 475 537 IPR041095 -
Bpe12g00290 831 CDD eEF2_snRNP_like_C 715 793 - -
Bpe12g00290 831 SUPERFAMILY Ribosomal protein S5 domain 2-like 550 714 IPR020568 -
Bpe12g00290 831 Gene3D Elongation Factor G (Translational Gtpase), domain 3 474 551 - -
Bpe12g00290 831 Gene3D - 1 225 IPR027417 -
Bpe12g00290 831 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 332 IPR000795 GO:0003924|GO:0005525
Bpe12g00290 831 Pfam Elongation factor Tu GTP binding domain 5 330 IPR000795 GO:0003924|GO:0005525
Bpe12g00290 831 Pfam Elongation factor G, domain IV 598 709 IPR005517 GO:0005525
Bpe12g00290 831 PANTHER - 1 830 - -
Bpe12g00290 831 Gene3D - 711 831 - -
Bpe12g00290 831 CDD EF2_II 363 458 - -
Bpe12g00290 831 SUPERFAMILY EF-G C-terminal domain-like 472 548 IPR035647 -
Bpe12g00290 831 SUPERFAMILY Translation proteins 331 464 IPR009000 -
Bpe12g00290 831 Pfam Elongation factor G C-terminus 712 799 IPR000640 -
Bpe12g00290 831 Gene3D Translation factors 331 472 - -
Bpe12g00290 831 SMART EFG_IV_2 594 710 IPR005517 GO:0005525
Bpe12g00290 831 Gene3D - 557 710 IPR014721 -
Bpe12g00290 831 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 329 IPR027417 -
Bpe12g00290 831 SMART EFG_C_a 712 801 IPR000640 -
Bpe12g00290 831 Pfam Elongation factor Tu domain 2 382 455 IPR004161 GO:0005525
Bpe12g00290 831 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 46 61 IPR031157 -
Bpe12g00290 831 SUPERFAMILY EF-G C-terminal domain-like 715 824 IPR035647 -
Bpe12g00290 831 TIGRFAM small_GTP: small GTP-binding protein domain 8 164 IPR005225 GO:0005525
Bpe12g00290 831 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 830 - -
Bpe12g00290 831 CDD aeEF2_snRNP_like_IV 547 719 - -
Bpe12g00290 831 PRINTS GTP-binding elongation factor signature 141 150 IPR000795 GO:0003924|GO:0005525
Bpe12g00290 831 PRINTS GTP-binding elongation factor signature 53 61 IPR000795 GO:0003924|GO:0005525
Bpe12g00290 831 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Bpe12g00290 831 PRINTS GTP-binding elongation factor signature 89 99 IPR000795 GO:0003924|GO:0005525
Bpe12g00290 831 PRINTS GTP-binding elongation factor signature 105 116 IPR000795 GO:0003924|GO:0005525
Bpe12g00290 831 CDD EF2 8 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00596 Bpe-Chr5:20001671 Bpe12g00290 Bpe-Chr12:3625686 3.94E-42 dispersed
Bpe07g00505 Bpe-Chr7:10179566 Bpe12g00290 Bpe-Chr12:3625686 0 dispersed
Bpe11g00980 Bpe-Chr11:7296321 Bpe12g00290 Bpe-Chr12:3625686 1.86E-138 dispersed
Bpe12g00290 Bpe-Chr12:3625686 Bpe15g00730 Bpe-Chr15:17806707 1.52E-20 dispersed
Bpe12g00290 Bpe-Chr12:3625686 Bpe02g02156 Bpe-Chr2:22840038 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00290 K03234 - rcu:8272623 1616.28