Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00293 ATGGCTTCCTCTTCCTTTCCCGCTTTTCTTGTTTTTTTAATCTTTTTTTCGGCCTTTTCTGCCGCTTTTGGTTCGGCTGACTTCTCCATAATCGACTATGATTCGAAGCACCACATGGGCGCGCTTGATCGGACAGATAAGGAGGTTATGAGAATTTATGAGTCTTGGCTAATCAAGCACGGAAAAGTCTACAACTCTCTGGGTGAAAAGGATAAGAGATTTCAGATCTTCAAGGATAATCTGAGGTTCATTGATGAGCATAACCGAGAGAGCCGGACTTACCGCGTCGGGCTGACCCGATTTGCTGATCTTGCGAACGAGGAGTATCGGGCCATGTTCTTGGGATCCAAAATCGGTCGGAAAGCTCGGCCTTCTCGGGTGGCGAACGATAGATATGTGTATCGGGATGGCGAGCAGTTGCCGGATTCCGTTGACTGGAGAGAGAAAGGTGCTGTTGGGGCTGTCAAGGATCAAGGCCAGTGTGGTGATTGCTGGGCGTTCTCGACAATCGCCGCCGTGGAAGGGATAAACAAAATTGTCACCGGCGATTATATCTCTTTATCAGAACAAGAACTTGTGGACTGTGACAGATCATACAACCAGGGCTGCAATGGAGGACTGATGGATTATGCATTTGAATTCATCATGAGCAATGGTGGCATTGATTCTGAAGAGAACTATCCTTACAATGCTCGTGACGGCCGCTGTGACCAGAATCGGAAAAACGCCAAAGTCGTGACGATTGATGGATACGAGGATGTTCCAGAGAATGACGAGAAAGCATTGAAGAAGGCGGTGTCAAACCAACCAGTCAGCGTCGCTATCGAAGCCGGCGGCAGGGCTTTCCAACTTTACCAATCGGGCGTCTTCACAGGTCGATGCGGCACAGATCTGGATCACGGCGTGGTGGCAGTCGGATACGGTAGAGAAAACGGCGTGGATTACTGGACGGTGAGGAACTCGTGGGGACCCGATTGGGGCGAAAGTGGATACATCAGATTAGAGCGGAACTTGGGGGGCAAAACGACGGGCAAATGCGGTATTGCGATAGAGCCTTCGTATCCCATCAAGAAGGGACTAAACCCGCCAAGGCCAAGCCCATCGCCGCCGTCGCCTGAGAGGCCCCCGACAATGTGCGATGAGTATAACTCATGCCCAGAGGCAAGCACATGCTGCTGTATTTATCAGTATGGAAGTTACTGCTTTGGATGGGGATGTTGCCCTCTCGAGTCGGCCACTTGCTGCGATGACGATTACAGTTGCTGTCCTCAGGAGTATCCGATCTGCGATCTGGAAGCCGAAACATGCCTGATGAGCAAACAAAATCCTCTAGGAGTGAAGATGTTGAAGCGGCTTCCGGCTAGACGTACAGGGTCGCCCCTGAATTTTGGGAAAATA 1398 50.64 MASSSFPAFLVFLIFFSAFSAAFGSADFSIIDYDSKHHMGALDRTDKEVMRIYESWLIKHGKVYNSLGEKDKRFQIFKDNLRFIDEHNRESRTYRVGLTRFADLANEEYRAMFLGSKIGRKARPSRVANDRYVYRDGEQLPDSVDWREKGAVGAVKDQGQCGDCWAFSTIAAVEGINKIVTGDYISLSEQELVDCDRSYNQGCNGGLMDYAFEFIMSNGGIDSEENYPYNARDGRCDQNRKNAKVVTIDGYEDVPENDEKALKKAVSNQPVSVAIEAGGRAFQLYQSGVFTGRCGTDLDHGVVAVGYGRENGVDYWTVRNSWGPDWGESGYIRLERNLGGKTTGKCGIAIEPSYPIKKGLNPPRPSPSPPSPERPPTMCDEYNSCPEASTCCCIYQYGSYCFGWGCCPLESATCCDDDYSCCPQEYPICDLEAETCLMSKQNPLGVKMLKRLPARRTGSPLNFGKI 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3686993 3689121 + Bpe024884 Bpe12g00293 112306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00293 466 Pfam Granulin 390 437 IPR000118 -
Bpe12g00293 466 CDD Peptidase_C1A 141 355 IPR039417 -
Bpe12g00293 466 Pfam Papain family cysteine protease 140 356 IPR000668 GO:0006508|GO:0008234
Bpe12g00293 466 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 298 308 IPR025660 -
Bpe12g00293 466 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 34 385 - -
Bpe12g00293 466 SMART Inhibitor_I29_2 53 109 IPR013201 -
Bpe12g00293 466 SMART pept_c1 140 356 IPR000668 GO:0006508|GO:0008234
Bpe12g00293 466 PANTHER CYSTEINE PROTEASE 34 385 - -
Bpe12g00293 466 Pfam Cathepsin propeptide inhibitor domain (I29) 53 109 IPR013201 -
Bpe12g00293 466 SUPERFAMILY Granulin repeat 376 410 - -
Bpe12g00293 466 SUPERFAMILY Cysteine proteinases 45 356 IPR038765 -
Bpe12g00293 466 MobiDBLite consensus disorder prediction 353 375 - -
Bpe12g00293 466 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 315 334 IPR025661 -
Bpe12g00293 466 Gene3D Granulin 376 439 IPR037277 -
Bpe12g00293 466 PRINTS Papain cysteine protease (C1) family signature 158 173 IPR000668 GO:0006508|GO:0008234
Bpe12g00293 466 PRINTS Papain cysteine protease (C1) family signature 300 310 IPR000668 GO:0006508|GO:0008234
Bpe12g00293 466 PRINTS Papain cysteine protease (C1) family signature 315 321 IPR000668 GO:0006508|GO:0008234
Bpe12g00293 466 MobiDBLite consensus disorder prediction 358 375 - -
Bpe12g00293 466 SMART GRAN_2 379 436 IPR000118 -
Bpe12g00293 466 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 158 169 IPR000169 -
Bpe12g00293 466 Gene3D Cysteine proteinases 29 358 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00293 K25900 RD21; cysteine proteinase RD21 [EC:3.4.22.-] - zju:107426962 707.983
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00549 Bpe-Chr8:3812767 Bpe12g00293 Bpe-Chr12:3686993 4.78E-71 dispersed
Bpe12g00293 Bpe-Chr12:3686993 Bpe15g00323 Bpe-Chr15:14770096 3.64E-165 dispersed
Bpe04g00172 Bpe-Chr4:1121470 Bpe12g00293 Bpe-Chr12:3686993 0 transposed
Bpe08g00759 Bpe-Chr8:9289624 Bpe12g00293 Bpe-Chr12:3686993 2.61E-122 transposed
Bpe15g00777 Bpe-Chr15:18066406 Bpe12g00293 Bpe-Chr12:3686993 1.66E-129 transposed
Bpe12g00293 Bpe-Chr12:3686993 Bpe15g00130 Bpe-Chr15:11233300 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g605 . . . . . Bpe12g00293 . . Cmo19g00605 . . . . . . Cpe04g00295 Cpe15g00476 . . . . . . . Cla02g00624 Cam02g0658 Cec02g0661 Cco02g0685 Clacu02g0666 . Cre02g0979 . . Cone3ag0991 Cone10ag1012 Lsi03g00521 Csa07g00735 . Cme01g00073 . . Bda15g00848 Bda14g01450 . . Bma03g01355 Bma08g00518 . . . Cma11g01732 . Car11g01109 Car19g00445 . . . . . . . . . . . . . . . . . . . .
Vvi12g211 . . . . Bpe12g00293 . Bma03g01355 Bma08g00518 . . . Cma20g00586 . Car20g00553 . . . . . . . . . . . . . . . . . Cone3ag1318 Cone10ag1266 . . . . . . . . . . . . . . . . Cmo20g00649 . . . . Cpe16g00415 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001585 7 2 1 3 5 2 3 1 2 1 1 1 2 2 2 1 0 5 4 2 2 2 2 2 2 1 2 5 3 3 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00293 Bpe_Chr12 FPKM 30.780741 34.946907 9.08877 8.897741 5.780195 5.717237 5.452925 16.657238 16.871458 16.807478