Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bpe12g00294 | ATGGACACAAAAACAGAAGATAATTCAGAATCGTCTCAGGCTAACACCTCTGGTGTCATACCATCTGAAGCACAGCATACTGCTGCTGTTACAGCTGAATCTGAGAATTTGAAACGTGACTTGCCATCTGGGCTATCTCCTACCAGCATATCTTCTTGGGCAAAAAATTTGAAGATTTCACAGCCTTTCGTTGGAACACAGGATGGCTCACCTAATGCAAACGCAGGAAAGTCCAGTTTTTCACGTTTCACCAGTGGCATTGGTTTGCAATTGTCCCCAAAAGATCCTTCTCCAGATGCCTCTGACAAAACGTCAAAAGTTCCAGAACCTGGTTTATTTGGATCACTCACAAAAGGTTTTGTTGAGTCTTCTAGAAGTGCTGTGAAGGCTGTACAGGCCAAAGCTAGGCATGCTGTCTCTCAAAATAAACGAAGATACCAGGAAGGCGGATTTGACTTGGATATGACATACATAACAGAGAACATAATTGCTATGGGATTTCCGGCTGGTGATATGAGTTCTGGGTTTTTTGGATATGTTGAGGGTTTCTACCGGAATCACATGGAAGAAGTTATAAAGTTCTTTGAAACTCATCACAAGGACAAATACAAAGTGTACAATCTTTGTTCTGAAAGGCTGTACGATGCTTCATTATTTGAAGGGAAGGTGGCTAGTTTTCCTTTTGATGATCATAATTGTCCCCCAACTCGACTGATAATATCATTTTGTCAAAGTGCTTACTCATGGCTGAAAGAAGATATTGAAAATGTAGTGGTTGTGCACTGCAAAGCAGGAATGGCTAGGACAGGGTTGATGATATCTAGTCTTCTTTTATACCTGAAGTTTTTTCCAACTGCCGAGGAGTCCATTGACTACTACAACCAAAAAAGGTGCTTTGATGGCAGGGGCCTTATTCTACCAAGTCAGATTAGATATGTCAAATATTTCGAGCGTATCTTAACATACTTCAATGGCGAAAATCCTCCTGGCCGTAGGTGCATGCTTAGGGGATTTCGGCTTCATAGATGTCCTTATTGGATCAGGCCCTCTATCACTGTGTCTGATCATAATGGTGTTCTTTTTTCATCCAAAAAACATCCAAGAACCAAAGATCTCTCTCCAGAAGATTTTTGGTTCAGTGCACCAAAGAAGGGGGTAATGGTATTTGCTTTGCCTGGGGAACCTGGTTTAACAGAGTTGGTGGGGGACTTCAAGATCCACTTCCATGATCGCCAAGGAGATTTCTACTGTTGGCTAAACACAACTATGACGGAAAACCGCAAAGTTCTCAACACTAATGATCTTGATGGGTTTGAAAAGAGGAAACTGCCTTCCCCAAGATTTCAGGTTGAGGTTGTTTTAGTGGATTATAATGGTAGCATTCCCACAACGCCTAATACTACAAATAATACGAAGAACTCCGATGAAAGATCTAGTTCAACTCCTGCTCCAATTGATGGCAGTCCAGCTCCTCCAAAACCTACGGAAAATCCTGTGAATGAGGACAAAGATGATGTGTTTTCAGACGGCGAATCCGATGAAGGTGGTTCTTCAAAGTCCAAGCAAGGTTCAAGCTCGATCTCTAATTCTGCGAGTGCGGGTCAAGATCAAGTTGTGAATTTAACACGGGCAGCGGAGGAAGTTTCTTTGCGAGACAATATGTCGAATCAAATCGAAACCTCCGGTATGCCCAAAAGTGATGGTGGGAGAGATGGTTCTGTCCAGGAAGCTCCAACCCCTGAAAGTGAGTTCAAAGCTATGGCAGCTGATGCTTCTGTTTTCACATTTGGCGATGAAGAGGATTATGAGAGTGAC | 1815 | 42.64 | MDTKTEDNSESSQANTSGVIPSEAQHTAAVTAESENLKRDLPSGLSPTSISSWAKNLKISQPFVGTQDGSPNANAGKSSFSRFTSGIGLQLSPKDPSPDASDKTSKVPEPGLFGSLTKGFVESSRSAVKAVQAKARHAVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKDKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPTRLIISFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCFDGRGLILPSQIRYVKYFERILTYFNGENPPGRRCMLRGFRLHRCPYWIRPSITVSDHNGVLFSSKKHPRTKDLSPEDFWFSAPKKGVMVFALPGEPGLTELVGDFKIHFHDRQGDFYCWLNTTMTENRKVLNTNDLDGFEKRKLPSPRFQVEVVLVDYNGSIPTTPNTTNNTKNSDERSSSTPAPIDGSPAPPKPTENPVNEDKDDVFSDGESDEGGSSKSKQGSSSISNSASAGQDQVVNLTRAAEEVSLRDNMSNQIETSGMPKSDGGRDGSVQEAPTPESEFKAMAADASVFTFGDEEDYESD | 605 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 3694760 | 3703177 | + | Bpe024885 | Bpe12g00294 | 112307 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bpe12g00294 | 605 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 18 | 605 | - | - | |
| Bpe12g00294 | 605 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 400 | 454 | IPR035892 | - | |
| Bpe12g00294 | 605 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 144 | 323 | IPR029023 | - | |
| Bpe12g00294 | 605 | CDD | PTP_PTEN | 154 | 319 | IPR045101 | GO:0016791 | |
| Bpe12g00294 | 605 | PANTHER | PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A | 18 | 605 | - | - | |
| Bpe12g00294 | 605 | SMART | PTEN_C2_2 | 328 | 456 | IPR014020 | - | |
| Bpe12g00294 | 605 | MobiDBLite | consensus disorder prediction | 8 | 32 | - | - | |
| Bpe12g00294 | 605 | ProSiteProfiles | C2 tensin-type domain profile. | 330 | 457 | IPR014020 | - | |
| Bpe12g00294 | 605 | MobiDBLite | consensus disorder prediction | 549 | 563 | - | - | |
| Bpe12g00294 | 605 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
| Bpe12g00294 | 605 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 260 | 270 | IPR016130 | GO:0016311|GO:0016791 | |
| Bpe12g00294 | 605 | Gene3D | - | 332 | 457 | - | - | |
| Bpe12g00294 | 605 | Gene3D | Protein tyrosine phosphatase superfamily | 129 | 326 | IPR029021 | - | |
| Bpe12g00294 | 605 | MobiDBLite | consensus disorder prediction | 459 | 590 | - | - | |
| Bpe12g00294 | 605 | MobiDBLite | consensus disorder prediction | 497 | 516 | - | - | |
| Bpe12g00294 | 605 | MobiDBLite | consensus disorder prediction | 459 | 484 | - | - | |
| Bpe12g00294 | 605 | MobiDBLite | consensus disorder prediction | 85 | 111 | - | - | |
| Bpe12g00294 | 605 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 237 | 297 | IPR000387 | GO:0016311|GO:0016791 | |
| Bpe12g00294 | 605 | MobiDBLite | consensus disorder prediction | 517 | 539 | - | - | |
| Bpe12g00294 | 605 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 157 | 324 | IPR029021 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bpe12g00294 | Bpe-Chr12:3694760 | Bpe14g00158 | Bpe-Chr14:2006929 | 1.02E-46 | dispersed | |
| Bpe12g00294 | Bpe-Chr12:3694760 | Bpe14g00599 | Bpe-Chr14:4986455 | 8.16E-07 | wgd | |
| Bpe12g00294 | Bpe-Chr12:3694760 | Bpe15g00128 | Bpe-Chr15:11205803 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bpe12g00294 | K01110 | - | mnt:21410065 | 883.634 |