Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00294 ATGGACACAAAAACAGAAGATAATTCAGAATCGTCTCAGGCTAACACCTCTGGTGTCATACCATCTGAAGCACAGCATACTGCTGCTGTTACAGCTGAATCTGAGAATTTGAAACGTGACTTGCCATCTGGGCTATCTCCTACCAGCATATCTTCTTGGGCAAAAAATTTGAAGATTTCACAGCCTTTCGTTGGAACACAGGATGGCTCACCTAATGCAAACGCAGGAAAGTCCAGTTTTTCACGTTTCACCAGTGGCATTGGTTTGCAATTGTCCCCAAAAGATCCTTCTCCAGATGCCTCTGACAAAACGTCAAAAGTTCCAGAACCTGGTTTATTTGGATCACTCACAAAAGGTTTTGTTGAGTCTTCTAGAAGTGCTGTGAAGGCTGTACAGGCCAAAGCTAGGCATGCTGTCTCTCAAAATAAACGAAGATACCAGGAAGGCGGATTTGACTTGGATATGACATACATAACAGAGAACATAATTGCTATGGGATTTCCGGCTGGTGATATGAGTTCTGGGTTTTTTGGATATGTTGAGGGTTTCTACCGGAATCACATGGAAGAAGTTATAAAGTTCTTTGAAACTCATCACAAGGACAAATACAAAGTGTACAATCTTTGTTCTGAAAGGCTGTACGATGCTTCATTATTTGAAGGGAAGGTGGCTAGTTTTCCTTTTGATGATCATAATTGTCCCCCAACTCGACTGATAATATCATTTTGTCAAAGTGCTTACTCATGGCTGAAAGAAGATATTGAAAATGTAGTGGTTGTGCACTGCAAAGCAGGAATGGCTAGGACAGGGTTGATGATATCTAGTCTTCTTTTATACCTGAAGTTTTTTCCAACTGCCGAGGAGTCCATTGACTACTACAACCAAAAAAGGTGCTTTGATGGCAGGGGCCTTATTCTACCAAGTCAGATTAGATATGTCAAATATTTCGAGCGTATCTTAACATACTTCAATGGCGAAAATCCTCCTGGCCGTAGGTGCATGCTTAGGGGATTTCGGCTTCATAGATGTCCTTATTGGATCAGGCCCTCTATCACTGTGTCTGATCATAATGGTGTTCTTTTTTCATCCAAAAAACATCCAAGAACCAAAGATCTCTCTCCAGAAGATTTTTGGTTCAGTGCACCAAAGAAGGGGGTAATGGTATTTGCTTTGCCTGGGGAACCTGGTTTAACAGAGTTGGTGGGGGACTTCAAGATCCACTTCCATGATCGCCAAGGAGATTTCTACTGTTGGCTAAACACAACTATGACGGAAAACCGCAAAGTTCTCAACACTAATGATCTTGATGGGTTTGAAAAGAGGAAACTGCCTTCCCCAAGATTTCAGGTTGAGGTTGTTTTAGTGGATTATAATGGTAGCATTCCCACAACGCCTAATACTACAAATAATACGAAGAACTCCGATGAAAGATCTAGTTCAACTCCTGCTCCAATTGATGGCAGTCCAGCTCCTCCAAAACCTACGGAAAATCCTGTGAATGAGGACAAAGATGATGTGTTTTCAGACGGCGAATCCGATGAAGGTGGTTCTTCAAAGTCCAAGCAAGGTTCAAGCTCGATCTCTAATTCTGCGAGTGCGGGTCAAGATCAAGTTGTGAATTTAACACGGGCAGCGGAGGAAGTTTCTTTGCGAGACAATATGTCGAATCAAATCGAAACCTCCGGTATGCCCAAAAGTGATGGTGGGAGAGATGGTTCTGTCCAGGAAGCTCCAACCCCTGAAAGTGAGTTCAAAGCTATGGCAGCTGATGCTTCTGTTTTCACATTTGGCGATGAAGAGGATTATGAGAGTGAC 1815 42.64 MDTKTEDNSESSQANTSGVIPSEAQHTAAVTAESENLKRDLPSGLSPTSISSWAKNLKISQPFVGTQDGSPNANAGKSSFSRFTSGIGLQLSPKDPSPDASDKTSKVPEPGLFGSLTKGFVESSRSAVKAVQAKARHAVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKDKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPTRLIISFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCFDGRGLILPSQIRYVKYFERILTYFNGENPPGRRCMLRGFRLHRCPYWIRPSITVSDHNGVLFSSKKHPRTKDLSPEDFWFSAPKKGVMVFALPGEPGLTELVGDFKIHFHDRQGDFYCWLNTTMTENRKVLNTNDLDGFEKRKLPSPRFQVEVVLVDYNGSIPTTPNTTNNTKNSDERSSSTPAPIDGSPAPPKPTENPVNEDKDDVFSDGESDEGGSSKSKQGSSSISNSASAGQDQVVNLTRAAEEVSLRDNMSNQIETSGMPKSDGGRDGSVQEAPTPESEFKAMAADASVFTFGDEEDYESD 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3694760 3703177 + Bpe024885 Bpe12g00294 112307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00294 605 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 18 605 - -
Bpe12g00294 605 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 400 454 IPR035892 -
Bpe12g00294 605 ProSiteProfiles Phosphatase tensin-type domain profile. 144 323 IPR029023 -
Bpe12g00294 605 CDD PTP_PTEN 154 319 IPR045101 GO:0016791
Bpe12g00294 605 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 18 605 - -
Bpe12g00294 605 SMART PTEN_C2_2 328 456 IPR014020 -
Bpe12g00294 605 MobiDBLite consensus disorder prediction 8 32 - -
Bpe12g00294 605 ProSiteProfiles C2 tensin-type domain profile. 330 457 IPR014020 -
Bpe12g00294 605 MobiDBLite consensus disorder prediction 549 563 - -
Bpe12g00294 605 MobiDBLite consensus disorder prediction 1 50 - -
Bpe12g00294 605 ProSitePatterns Tyrosine specific protein phosphatases active site. 260 270 IPR016130 GO:0016311|GO:0016791
Bpe12g00294 605 Gene3D - 332 457 - -
Bpe12g00294 605 Gene3D Protein tyrosine phosphatase superfamily 129 326 IPR029021 -
Bpe12g00294 605 MobiDBLite consensus disorder prediction 459 590 - -
Bpe12g00294 605 MobiDBLite consensus disorder prediction 497 516 - -
Bpe12g00294 605 MobiDBLite consensus disorder prediction 459 484 - -
Bpe12g00294 605 MobiDBLite consensus disorder prediction 85 111 - -
Bpe12g00294 605 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 237 297 IPR000387 GO:0016311|GO:0016791
Bpe12g00294 605 MobiDBLite consensus disorder prediction 517 539 - -
Bpe12g00294 605 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 157 324 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00294 K01110 PTEN; phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [EC:3.1.3.16 3.1.3.48 3.1.3.67] - mnt:21410065 883.634
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00294 Bpe-Chr12:3694760 Bpe14g00158 Bpe-Chr14:2006929 1.02E-46 dispersed
Bpe12g00294 Bpe-Chr12:3694760 Bpe14g00599 Bpe-Chr14:4986455 8.16E-07 wgd
Bpe12g00294 Bpe-Chr12:3694760 Bpe15g00128 Bpe-Chr15:11205803 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g606 . . . . . Bpe12g00294 . . . Cmo11g01384 . . . . . Cpe04g00296 Cpe15g00475 . . . . . . . Cla02g00625 . Cec02g0662 . . Cmu02g0661 . . . Cone3ag0992 Cone10ag1013 Lsi03g00522 Csa07g00734 . Cme01g00074 . . Bda15g00847 Bda14g01451 . . Bma03g01356 Bma08g00514 . . . Cma11g01730 Cma19g00587 Car11g01110 . . . . . . . . . . . . . . . . . . . Chy01g00080 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00294 . 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.6 5.4e-185 644.4
Bpe15g00128 . 42 471 Protein tyrosine phosphatase (PTP) family AT3G50110 69.3 8.9e-172 600.5
Bpe14g00158 . 1 427 Protein tyrosine phosphatase (PTP) family AT5G39400 62.3 1.6e-150 529.3
Bpe04g01654 . 4 848 Protein tyrosine phosphatase (PTP) family AT3G10550 68.0 0.0e+00 1152.5
Bpe04g01654 . 6 850 Protein tyrosine phosphatase (PTP) family AT5G04540 64.5 0.0e+00 1081.6
Bpe12g00460 . 73 934 Protein tyrosine phosphatase (PTP) family AT5G23720 61.5 7.8e-294 1006.5
Bpe04g01185 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 57.6 2.3e-42 168.7
Bpe15g00162 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 2.5e-71 265.0
Bpe15g01037 . 44 322 Protein tyrosine phosphatase (PTP) family AT3G52180 69.9 1.2e-115 412.9
Bpe15g01203 . 27 289 Protein tyrosine phosphatase (PTP) family AT3G10940 70.8 1.8e-111 399.1
Bpe02g01492 . 137 541 Protein tyrosine phosphatase (PTP) family AT3G01510 69.3 2.2e-177 618.6
Bpe14g00621 CCT 15 211 Protein tyrosine phosphatase (PTP) family AT2G32960 55.9 1.2e-69 260.0
Bpe12g00275 BCT,CCT 3 228 Protein tyrosine phosphatase (PTP) family AT2G32960 56.4 3.7e-68 255.0
Bpe15g00169 BCT,CCT 34 189 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 1.1e-64 243.4
Bpe14g00022 . 17 164 Protein tyrosine phosphatase (PTP) family AT2G32960 52.2 3.5e-50 195.3
Bpe11g00633 . 1 330 Protein tyrosine phosphatase (PTP) family AT2G35680 57.1 3.7e-100 361.7
Bpe02g02223 . 6 273 Protein tyrosine phosphatase (PTP) family AT2G35680 53.9 5.2e-78 288.1
Bpe14g00621 CCT 47 211 Protein tyrosine phosphatase (PTP) family AT4G03960 73.3 6.0e-74 273.9
Bpe15g00169 BCT,CCT 22 189 Protein tyrosine phosphatase (PTP) family AT4G03960 68.5 2.4e-67 251.9
Bpe12g00275 BCT,CCT 39 228 Protein tyrosine phosphatase (PTP) family AT4G03960 59.4 6.6e-65 243.8
Bpe14g00022 . 13 168 Protein tyrosine phosphatase (PTP) family AT4G03960 57.7 3.4e-53 204.9
Bpe14g00022 . 4 203 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 2.5e-83 305.1
Bpe15g00169 BCT,CCT 28 189 Protein tyrosine phosphatase (PTP) family AT3G02800 61.7 1.8e-57 219.2
Bpe14g00621 CCT 34 205 Protein tyrosine phosphatase (PTP) family AT3G02800 59.3 2.6e-56 215.3
Bpe12g00275 BCT,CCT 58 220 Protein tyrosine phosphatase (PTP) family AT3G02800 61.3 8.3e-55 210.3
Bpe04g01698 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.7 2.7e-61 233.8
Bpe14g00158 . 1 427 Protein tyrosine phosphatase (PTP) family AT5G39400 62.3 1.6e-150 529.3
Bpe12g00294 . 32 605 Protein tyrosine phosphatase (PTP) family AT3G19420 68.8 1.4e-230 795.8
Bpe15g00128 . 34 620 Protein tyrosine phosphatase (PTP) family AT3G19420 65.5 4.1e-214 741.1
Bpe12g00294 . 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.6 5.4e-185 644.4
Bpe15g00128 . 42 471 Protein tyrosine phosphatase (PTP) family AT3G50110 69.3 8.9e-172 600.5
Bpe04g01654 . 4 848 Protein tyrosine phosphatase (PTP) family AT3G10550 68.0 0.0e+00 1152.5
Bpe04g01654 . 6 850 Protein tyrosine phosphatase (PTP) family AT5G04540 64.5 0.0e+00 1081.6
Bpe11g00849 . 4 244 Protein tyrosine phosphatase (PTP) family AT3G44620 56.1 1.6e-74 276.2
Bpe07g00217 . 19 317 Protein tyrosine phosphatase (PTP) family AT2G35320 61.7 1.2e-110 396.4
Bpe03g01015 . 1 662 Protein tyrosine phosphatase (PTP) family AT3G09100 69.7 4.1e-284 973.8
Bpe03g01015 . 5 662 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 7.6e-259 889.8
Bpe03g01015 . 87 669 Protein tyrosine phosphatase (PTP) family AT5G28210 57.5 7.6e-184 640.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001006 4 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 11 6 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00294 Bpe_Chr12 FPKM 40.140095 40.388317 14.553099 10.315734 4.133778 6.39921 8.857142 10.854435 10.490609 16.031069