Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00298 ATGGAAGGGACTGTCTTAGGTCTTCCTCTTTATTACCAATTAAACATCTTCCCCATTGTAAAGTGTGTGTGGCTTACACACTTCCTCTTTTCTGACTCTCACCTGCTCTCCAGTCCCACCGGAGAAAATAAAATACACCGAGAGAGAGAGAGAGACTTAAACCCCACTTCATTCACATTGCATCACACATTCTCTCTCTACACCTCTCTCTCTCTCTCTCTCTCTCTCTCCATTGAAATGACGCCTTACCTCTTCCGCATTTTCTTCCTCACCCTTCTCCGGCTCTCGTTCTTTTCTCTACTCTGTCATAATAATGTCGGAGAAGTTGACGCCCTCACTTTCTCATCTGACATTGCTGCCCTTAAAGCCTTCAAAGCCGCCGTTAAACCCGGTTCCATCCAACCTTGGTCGTGCTTGGCCTCCTGGAACTTCTCTACTGACCCATGTCTCCTCCCTCGCCGCACGTTCTTCGTCTGCGGAATCCTATGCAACACCGAGTCCACCAGGGTCACCCAACTCACCCTCGATCCCGCGGGTTATTCCGGTACCCTTTCTCCACTCGTTTCTCAACTCACTGCGCTGACTGTTATTGACCTCTCTGATAATTACTTCTCCGGTTCGATTCCCTCTTCTATTTCTTCTCTCTCTAACCTCCAGATCCTGACTCTCCGATCTAATGCGTTTTCTGGACCTGTTCCTTCCGCAATTACTAACCTCAAGAACCTTGATTCCTTAGACCTTGCTCACAATTCCCTCTCTGGGAATCTCCCATCTTCTCTAAACTCTCTCTCTAGCTTAAGACGTCTCGATCTGAGCTACAATGGAGTTGGCGGGGCTCTCCCAAAACTCCCACCTAACTTGGTGGAGGTCGCTCTGAAGAAAAACTCTCTCTCTGGGGCTCTCTCTGAATCGTCGTTCAGTGGGTTGACTCAGCTGGAGGTGGTCGAACTGAGTGAAAACTCGCTAACCGGAACTTTAGAGTCCTGGTTTTTCCTCCTCACTTCGCTTCAACAGGTCGACTTATCCAATAATAGTTTGACACGTGTCACGATCTTAAGGCCTGCATCTAATTTCAGCAGCGACCTCGTGGCCGTCGATTTGGGCTTCAACAAAATCGAAGGCTACGCGCCCGCGAATTTCGCGGCTTATCCTCTGCTGTCGTCTCTCTCGCTACGCTACAACCGACTGCGTGGCGCTATTCCATTGGAGTACAGCGAGAAAAAATCGCTCAGAAGATTGTACCTGGACGGAAACTTCTTAACAGGAAAGCCTCCGCCGGCGTTTTTCGCCGAGGAATCGTCGGTCACCGGCAGTTTGGGAAATAACTGTCTGGATGGATGCCCACCGTCATCGGCACTGTGTACTCCGTCGCAGAAGCCGAATGCCATCTGCAAGGAAGCCAACGGCGGTGGAAAGCCTAGGTTTTGA 1428 50.0 MEGTVLGLPLYYQLNIFPIVKCVWLTHFLFSDSHLLSSPTGENKIHRERERDLNPTSFTLHHTFSLYTSLSLSLSLSIEMTPYLFRIFFLTLLRLSFFSLLCHNNVGEVDALTFSSDIAALKAFKAAVKPGSIQPWSCLASWNFSTDPCLLPRRTFFVCGILCNTESTRVTQLTLDPAGYSGTLSPLVSQLTALTVIDLSDNYFSGSIPSSISSLSNLQILTLRSNAFSGPVPSAITNLKNLDSLDLAHNSLSGNLPSSLNSLSSLRRLDLSYNGVGGALPKLPPNLVEVALKKNSLSGALSESSFSGLTQLEVVELSENSLTGTLESWFFLLTSLQQVDLSNNSLTRVTILRPASNFSSDLVAVDLGFNKIEGYAPANFAAYPLLSSLSLRYNRLRGAIPLEYSEKKSLRRLYLDGNFLTGKPPPAFFAEESSVTGSLGNNCLDGCPPSSALCTPSQKPNAICKEANGGGKPRF 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4029204 4030631 - Bpe005543.1 Bpe12g00298 112311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00298 475 Gene3D Ribonuclease Inhibitor 114 283 IPR032675 -
Bpe12g00298 475 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 97 473 - -
Bpe12g00298 475 Gene3D Ribonuclease Inhibitor 284 458 IPR032675 -
Bpe12g00298 475 SMART LRR_typ_2 191 215 IPR003591 -
Bpe12g00298 475 SMART LRR_typ_2 263 290 IPR003591 -
Bpe12g00298 475 SMART LRR_typ_2 333 354 IPR003591 -
Bpe12g00298 475 SMART LRR_typ_2 309 332 IPR003591 -
Bpe12g00298 475 SMART LRR_typ_2 239 262 IPR003591 -
Bpe12g00298 475 PRINTS Leucine-rich repeat signature 242 255 - -
Bpe12g00298 475 PRINTS Leucine-rich repeat signature 333 346 - -
Bpe12g00298 475 Pfam Leucine Rich Repeat 194 215 IPR001611 GO:0005515
Bpe12g00298 475 Pfam Leucine Rich Repeat 409 428 IPR001611 GO:0005515
Bpe12g00298 475 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 97 473 - -
Bpe12g00298 475 SUPERFAMILY L domain-like 157 450 - -
Bpe12g00298 475 Pfam Leucine rich repeat 285 346 IPR001611 GO:0005515
Bpe12g00298 475 Pfam Leucine rich repeat 233 274 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00298 - - - csv:101221363 494.967
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00143 Bpe-Chr10:2948407 Bpe12g00298 Bpe-Chr12:4029204 2.79E-54 dispersed
Bpe12g00298 Bpe-Chr12:4029204 Bpe08g00263 Bpe-Chr8:1526456 8.43E-36 dispersed
Bpe12g00298 Bpe-Chr12:4029204 Bpe03g00927 Bpe-Chr3:28950384 1.36E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g614 . Blo03g00087 . . . Bpe12g00298 . . Cmo19g00600 Cmo11g01389 . . . . . Cpe04g00301 Cpe15g00471 . . . . . . . Cla02g00630 Cam02g0664 Cec02g0668 Cco02g0692 Clacu02g0672 Cmu02g0666 Cre02g0985 . Cone8ag1111 Cone3ag0994 Cone10ag1015 Lsi03g00527 Csa07g00728 . Cme01g00080 . . Bda15g00844 . . . . Bma08g00506 . . . Cma11g01726 . Car11g01115 . . . Bhi11g01177 . . . . . . . . . . . . . . . Chy01g00086 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008155 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00298 Bpe_Chr12 FPKM 10.09712 12.27389 8.017174 8.550053 9.635514 8.002992 10.959344 4.439764 4.063073 3.996197