Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00329 ATGGGTGACCCCGGATCTTACTGCTTAAGCCCTCGCTTGGATATTCAACAATTGTTGTTGGAAGCAAAACATCGATGGTTACGACCTGCTGAAATTTGTGAAATTCTCCGTAATTATCAGATGTTTCGTATTGAATCAAAGCCTCCACACATACCGCCAAGTGGTTCACTTTTTCTTTTCGATCGAAAGGTTTTGAGATACTTTAGAAAGGATGGGCATAATTGGAGGAAGAAGAAAGATGGCAAGACTGTGAAGGAAGCTCACGAGAAGCTGAAGGTTGGAAGCATTGATGTATTACACTGTTATTATGCCCATGGAGAAGAAAATGAAAACTTCCAACGACGTAGCTATTGGATGCTTGAAGAGGATTTAATGCACATAGTTTTTGTTCACTATCTGGAAGTTAAGGGATCCAGAACTAATGTTGGAGCGCCAAGAGAGACTGATGTTTCAAGTTCAAGAAAGACCAGTCCTACAAGTACTAGTTTTTCCAAAAGTCATGCCAAATCAACTTCTGGTTATTTGGATTCCCCCACAACAACTAGCTCGTTGACGTCTTTGTGTGAAGATGCTGATTCTGAGGATGGCTACCAAGCAACTTCAAATTTCCATTCATTTCCGGAGTTGGCAACCGCACAAACCAGAAGCTCTCCTCTTTTGGCTCAGACGAACATTGGCTTCCCAGATTTTTATTACCAGCGTCCTGAGCAATCTCAACCAGCTCAGACCGATGGACTTATCGATTTTGATGAAGACCCTCGAGTGATTGATTCTCAAAAAACACTTGGTACTGCCTCTTGGGAAGAGATCTTACAACAGTGTACGAGTGGATCCCACTCTGGACAGTCTGCTGTTTCAACGTCTGCAACGAGGTCTATTACATCAGGGATTGTTCTTGGTCAAGAAAATATAAATTCAAGCATTAATTTCTCAGTGGATAGTACTGTCCCGGAGGACCATGGAACTTCTATGGCAGTTTCATCAAATTGGCAGATTCCTGTTGTAGACAATTCATTACCCTTTCCAAAAGAGCACGTGGACCAATTATCAGAGCTTGAAACTGTTTACGATCTGGAGGCCGGTGTGTCTGGGCACAGAAATCATGATGAAGTCCTTGAAAATTCTCAGAAGTTACATCTTTCTCATCTTGAAATGTTAAATGAACAACATATGTCGAGCAATCTTCCGTACCAACTAGCAAATGGAGAATCTCAGTGCTTGATGAAATTGAATTCTGAGAAAGACTTGATCCTAGATGGAAATGTTCACTATGCTTCAACTTTGCGACAATCGCTCGTAGAAGGAGACGAAGCTTTGAAAAAAGTTGACAGTTTTTCTCGCTGGATATATAGAGAATTAGGGGATGTTGATGATTTGCGTATGCATCCGTCCCCAGGAATTTCATGGAGTGCTGATGAATGTGGAAATATTAATGACGATTCCTCCTTGAGCCCCTCACTTTCTCAAGACCAGCTTTTCAGCATAACTGACTATTCTCCAAAGTGGTCATTCACAGACATGGAAACTGAGGTTTTGATTGTTGGACGATTTCTGGGGATTCACCAAGATGTTGCCAAATGTAATTGGTCATGTATGTTTGGGGAAGTAGAGGTTCCTGCAATGGTTTTGGCCAATGGAATTCTTTGTTGCCGTGCTCCACCTTATACTACAGGACAAGTGCCTTTTTATGTAACATTTTCCAACAGATTAGCTTGCAGTGAAGTGCGAGAATTTCAGTATCTGGCTGGCTCTGTCAAGGATGTGGATGTCACAGATATCTATGATGGTGGTACAGATGAATTGCCTCTGCATTTGCAACTTGACAGCTTATTATCTCTGAATTATCTTGGATCTCCTAGCAATATCTTTATAGATGATTTGGACAAACGGAATGTAATTCGTAAACTTATTGCACTCAAGGATGAAAAAGATTACATTGTTGAGCCAGATTCTCAGGAAGAACTGATCCAGCAGGAGAAAAAGAAATATTTCTTTAAAATCTTGATGAAAGAAATGTTGTACTCATGGCTCCTTCATAAAGTTGTTGAAGATGGAAAAGGACCTAATGTGTGGGATGAAAATGGGCGAGGGGTAATTCATTTGGCTGCTGCTCTTGGTTATGATTGGGCCATGAAACCAATTGTGAGTGCAGGAGTTAGTATAAATTTCCGTGATGTCAATGGATGGACTGCACTTCACTGGGCAGCTTACTATGGCAGAGAGCAGACGATTGCAGTTCTTATCACTTTGGGCGGTGGCGCTGGTCTCGTGACAGATCCATCTCCTGAACATCCTTTGGGAAGAACACCTGCAGACCTCGCATCTGCCAACGGTCATAAAGGGATCTCTGGATTTTTGGCAGAATCTTCAATGACTAGCCAGCTATCAACTTTAACAATGAATGATACCAAGCGAGACAGTGAAGACGTTTCATCCACCAAAGTTGTGCATAGTGTTTCTGAAAGAATCGCAACTCCTGCCAATGATGGTTATTTGCCTGGTGAACTGTCTCTAAAGGATTCACTCACAGCTGTTAGTCATGCAACACAAGTCGCTGATCAAATACATCTGATGATCAGGATGCAGTCGTTTCAGAGGAAACAGTTTGCAGAACACAACGGGGATCAGTTTGATCATACACTTTCAATTGTTGCTGCCAGAGCACTAAAGGGCGGACAAGGCAACAGGCTTGCACATTCTGCCGCAATTCACATACAGAAAAAGTTTCGTGGTTGGAAAAAAAGAAAAGAGTTCTTGTTGATTCGGCAAAGAATAGTTAAAATACAGGCCCATGTAAGGGGACACCAGGTTCGGAAGAAATACCCATCAATGACCTGGTCAATAGGAATTGTAGATACTTTATTGCGTTGGAGACGTAAAGGAAGCGGTCTGCGGCCGATGGTGGTTCCTAAGGAACCTACCTCTGATAGCATCCTAGAAGAGGAGGACGATGATTTTTTGAAGAAAGGAAGGAGACAAACTGAGGAGAGGTTGCAAAAGGCACTAACTAGAGTTAAGTCTATGGCTCAGGATCCTCAGGGACGAGATCAGTACCGTAGGCTGCTAACTTTAGTACATGGGATTCGTGAAAACAAGGTGTCTGGTATGGCCGTTACAGGTTCAGAGAATAGGGTTGATGAGGAGCTGATTGACTTAGATGATATACTTGACGATGAAACCTTAATGTCTATAACATTTGATTGA 3204 42.17 MGDPGSYCLSPRLDIQQLLLEAKHRWLRPAEICEILRNYQMFRIESKPPHIPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEDLMHIVFVHYLEVKGSRTNVGAPRETDVSSSRKTSPTSTSFSKSHAKSTSGYLDSPTTTSSLTSLCEDADSEDGYQATSNFHSFPELATAQTRSSPLLAQTNIGFPDFYYQRPEQSQPAQTDGLIDFDEDPRVIDSQKTLGTASWEEILQQCTSGSHSGQSAVSTSATRSITSGIVLGQENINSSINFSVDSTVPEDHGTSMAVSSNWQIPVVDNSLPFPKEHVDQLSELETVYDLEAGVSGHRNHDEVLENSQKLHLSHLEMLNEQHMSSNLPYQLANGESQCLMKLNSEKDLILDGNVHYASTLRQSLVEGDEALKKVDSFSRWIYRELGDVDDLRMHPSPGISWSADECGNINDDSSLSPSLSQDQLFSITDYSPKWSFTDMETEVLIVGRFLGIHQDVAKCNWSCMFGEVEVPAMVLANGILCCRAPPYTTGQVPFYVTFSNRLACSEVREFQYLAGSVKDVDVTDIYDGGTDELPLHLQLDSLLSLNYLGSPSNIFIDDLDKRNVIRKLIALKDEKDYIVEPDSQEELIQQEKKKYFFKILMKEMLYSWLLHKVVEDGKGPNVWDENGRGVIHLAAALGYDWAMKPIVSAGVSINFRDVNGWTALHWAAYYGREQTIAVLITLGGGAGLVTDPSPEHPLGRTPADLASANGHKGISGFLAESSMTSQLSTLTMNDTKRDSEDVSSTKVVHSVSERIATPANDGYLPGELSLKDSLTAVSHATQVADQIHLMIRMQSFQRKQFAEHNGDQFDHTLSIVAARALKGGQGNRLAHSAAIHIQKKFRGWKKRKEFLLIRQRIVKIQAHVRGHQVRKKYPSMTWSIGIVDTLLRWRRKGSGLRPMVVPKEPTSDSILEEEDDDFLKKGRRQTEERLQKALTRVKSMAQDPQGRDQYRRLLTLVHGIRENKVSGMAVTGSENRVDEELIDLDDILDDETLMSITFD 1067
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7231739 7246050 - Bpe005581.1 Bpe12g00329 112342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00329 1067 Pfam IPT/TIG domain 494 579 IPR002909 -
Bpe12g00329 1067 CDD IPT 494 581 - -
Bpe12g00329 1067 ProSiteProfiles Ankyrin repeat region circular profile. 727 751 - -
Bpe12g00329 1067 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 5 1067 - -
Bpe12g00329 1067 SUPERFAMILY Ankyrin repeat 677 788 IPR036770 -
Bpe12g00329 1067 SMART CG_1_2 18 136 IPR005559 GO:0003677
Bpe12g00329 1067 ProSiteProfiles IQ motif profile. 898 927 IPR000048 GO:0005515
Bpe12g00329 1067 Coils Coil 991 1011 - -
Bpe12g00329 1067 ProSiteProfiles IQ motif profile. 921 945 IPR000048 GO:0005515
Bpe12g00329 1067 SMART iq_5 897 919 IPR000048 GO:0005515
Bpe12g00329 1067 SMART iq_5 920 942 IPR000048 GO:0005515
Bpe12g00329 1067 Gene3D - 898 945 - -
Bpe12g00329 1067 SUPERFAMILY E set domains 495 580 IPR014756 -
Bpe12g00329 1067 Gene3D Immunoglobulins 488 584 IPR013783 -
Bpe12g00329 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 895 947 IPR027417 -
Bpe12g00329 1067 MobiDBLite consensus disorder prediction 144 181 - -
Bpe12g00329 1067 Pfam Ankyrin repeats (3 copies) 699 788 IPR002110 GO:0005515
Bpe12g00329 1067 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Bpe12g00329 1067 SMART ANK_2a 694 723 IPR002110 GO:0005515
Bpe12g00329 1067 SMART ANK_2a 727 759 IPR002110 GO:0005515
Bpe12g00329 1067 SMART ANK_2a 766 795 IPR002110 GO:0005515
Bpe12g00329 1067 ProSiteProfiles Ankyrin repeat profile. 727 759 IPR002110 GO:0005515
Bpe12g00329 1067 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Bpe12g00329 1067 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 5 1067 - -
Bpe12g00329 1067 Pfam IQ calmodulin-binding motif 923 941 IPR000048 GO:0005515
Bpe12g00329 1067 Pfam IQ calmodulin-binding motif 899 918 IPR000048 GO:0005515
Bpe12g00329 1067 Gene3D - 655 797 IPR036770 -
Bpe12g00329 1067 MobiDBLite consensus disorder prediction 142 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00883 Bpe-Chr4:5911879 Bpe12g00329 Bpe-Chr12:7231739 2.63E-45 dispersed
Bpe12g00329 Bpe-Chr12:7231739 Bpe15g00767 Bpe-Chr15:18012290 2.64E-07 dispersed
Bpe12g00329 Bpe-Chr12:7231739 Bpe05g00947 Bpe-Chr5:22392835 2.87E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22187 PF03859 CG-1 4.90E-50 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00329 K21596 - csv:101203707 1214.91