Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00329 ATGGGTGACCCCGGATCTTACTGCTTAAGCCCTCGCTTGGATATTCAACAATTGTTGTTGGAAGCAAAACATCGATGGTTACGACCTGCTGAAATTTGTGAAATTCTCCGTAATTATCAGATGTTTCGTATTGAATCAAAGCCTCCACACATACCGCCAAGTGGTTCACTTTTTCTTTTCGATCGAAAGGTTTTGAGATACTTTAGAAAGGATGGGCATAATTGGAGGAAGAAGAAAGATGGCAAGACTGTGAAGGAAGCTCACGAGAAGCTGAAGGTTGGAAGCATTGATGTATTACACTGTTATTATGCCCATGGAGAAGAAAATGAAAACTTCCAACGACGTAGCTATTGGATGCTTGAAGAGGATTTAATGCACATAGTTTTTGTTCACTATCTGGAAGTTAAGGGATCCAGAACTAATGTTGGAGCGCCAAGAGAGACTGATGTTTCAAGTTCAAGAAAGACCAGTCCTACAAGTACTAGTTTTTCCAAAAGTCATGCCAAATCAACTTCTGGTTATTTGGATTCCCCCACAACAACTAGCTCGTTGACGTCTTTGTGTGAAGATGCTGATTCTGAGGATGGCTACCAAGCAACTTCAAATTTCCATTCATTTCCGGAGTTGGCAACCGCACAAACCAGAAGCTCTCCTCTTTTGGCTCAGACGAACATTGGCTTCCCAGATTTTTATTACCAGCGTCCTGAGCAATCTCAACCAGCTCAGACCGATGGACTTATCGATTTTGATGAAGACCCTCGAGTGATTGATTCTCAAAAAACACTTGGTACTGCCTCTTGGGAAGAGATCTTACAACAGTGTACGAGTGGATCCCACTCTGGACAGTCTGCTGTTTCAACGTCTGCAACGAGGTCTATTACATCAGGGATTGTTCTTGGTCAAGAAAATATAAATTCAAGCATTAATTTCTCAGTGGATAGTACTGTCCCGGAGGACCATGGAACTTCTATGGCAGTTTCATCAAATTGGCAGATTCCTGTTGTAGACAATTCATTACCCTTTCCAAAAGAGCACGTGGACCAATTATCAGAGCTTGAAACTGTTTACGATCTGGAGGCCGGTGTGTCTGGGCACAGAAATCATGATGAAGTCCTTGAAAATTCTCAGAAGTTACATCTTTCTCATCTTGAAATGTTAAATGAACAACATATGTCGAGCAATCTTCCGTACCAACTAGCAAATGGAGAATCTCAGTGCTTGATGAAATTGAATTCTGAGAAAGACTTGATCCTAGATGGAAATGTTCACTATGCTTCAACTTTGCGACAATCGCTCGTAGAAGGAGACGAAGCTTTGAAAAAAGTTGACAGTTTTTCTCGCTGGATATATAGAGAATTAGGGGATGTTGATGATTTGCGTATGCATCCGTCCCCAGGAATTTCATGGAGTGCTGATGAATGTGGAAATATTAATGACGATTCCTCCTTGAGCCCCTCACTTTCTCAAGACCAGCTTTTCAGCATAACTGACTATTCTCCAAAGTGGTCATTCACAGACATGGAAACTGAGGTTTTGATTGTTGGACGATTTCTGGGGATTCACCAAGATGTTGCCAAATGTAATTGGTCATGTATGTTTGGGGAAGTAGAGGTTCCTGCAATGGTTTTGGCCAATGGAATTCTTTGTTGCCGTGCTCCACCTTATACTACAGGACAAGTGCCTTTTTATGTAACATTTTCCAACAGATTAGCTTGCAGTGAAGTGCGAGAATTTCAGTATCTGGCTGGCTCTGTCAAGGATGTGGATGTCACAGATATCTATGATGGTGGTACAGATGAATTGCCTCTGCATTTGCAACTTGACAGCTTATTATCTCTGAATTATCTTGGATCTCCTAGCAATATCTTTATAGATGATTTGGACAAACGGAATGTAATTCGTAAACTTATTGCACTCAAGGATGAAAAAGATTACATTGTTGAGCCAGATTCTCAGGAAGAACTGATCCAGCAGGAGAAAAAGAAATATTTCTTTAAAATCTTGATGAAAGAAATGTTGTACTCATGGCTCCTTCATAAAGTTGTTGAAGATGGAAAAGGACCTAATGTGTGGGATGAAAATGGGCGAGGGGTAATTCATTTGGCTGCTGCTCTTGGTTATGATTGGGCCATGAAACCAATTGTGAGTGCAGGAGTTAGTATAAATTTCCGTGATGTCAATGGATGGACTGCACTTCACTGGGCAGCTTACTATGGCAGAGAGCAGACGATTGCAGTTCTTATCACTTTGGGCGGTGGCGCTGGTCTCGTGACAGATCCATCTCCTGAACATCCTTTGGGAAGAACACCTGCAGACCTCGCATCTGCCAACGGTCATAAAGGGATCTCTGGATTTTTGGCAGAATCTTCAATGACTAGCCAGCTATCAACTTTAACAATGAATGATACCAAGCGAGACAGTGAAGACGTTTCATCCACCAAAGTTGTGCATAGTGTTTCTGAAAGAATCGCAACTCCTGCCAATGATGGTTATTTGCCTGGTGAACTGTCTCTAAAGGATTCACTCACAGCTGTTAGTCATGCAACACAAGTCGCTGATCAAATACATCTGATGATCAGGATGCAGTCGTTTCAGAGGAAACAGTTTGCAGAACACAACGGGGATCAGTTTGATCATACACTTTCAATTGTTGCTGCCAGAGCACTAAAGGGCGGACAAGGCAACAGGCTTGCACATTCTGCCGCAATTCACATACAGAAAAAGTTTCGTGGTTGGAAAAAAAGAAAAGAGTTCTTGTTGATTCGGCAAAGAATAGTTAAAATACAGGCCCATGTAAGGGGACACCAGGTTCGGAAGAAATACCCATCAATGACCTGGTCAATAGGAATTGTAGATACTTTATTGCGTTGGAGACGTAAAGGAAGCGGTCTGCGGCCGATGGTGGTTCCTAAGGAACCTACCTCTGATAGCATCCTAGAAGAGGAGGACGATGATTTTTTGAAGAAAGGAAGGAGACAAACTGAGGAGAGGTTGCAAAAGGCACTAACTAGAGTTAAGTCTATGGCTCAGGATCCTCAGGGACGAGATCAGTACCGTAGGCTGCTAACTTTAGTACATGGGATTCGTGAAAACAAGGTGTCTGGTATGGCCGTTACAGGTTCAGAGAATAGGGTTGATGAGGAGCTGATTGACTTAGATGATATACTTGACGATGAAACCTTAATGTCTATAACATTTGATTGA 3204 42.17 MGDPGSYCLSPRLDIQQLLLEAKHRWLRPAEICEILRNYQMFRIESKPPHIPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEDLMHIVFVHYLEVKGSRTNVGAPRETDVSSSRKTSPTSTSFSKSHAKSTSGYLDSPTTTSSLTSLCEDADSEDGYQATSNFHSFPELATAQTRSSPLLAQTNIGFPDFYYQRPEQSQPAQTDGLIDFDEDPRVIDSQKTLGTASWEEILQQCTSGSHSGQSAVSTSATRSITSGIVLGQENINSSINFSVDSTVPEDHGTSMAVSSNWQIPVVDNSLPFPKEHVDQLSELETVYDLEAGVSGHRNHDEVLENSQKLHLSHLEMLNEQHMSSNLPYQLANGESQCLMKLNSEKDLILDGNVHYASTLRQSLVEGDEALKKVDSFSRWIYRELGDVDDLRMHPSPGISWSADECGNINDDSSLSPSLSQDQLFSITDYSPKWSFTDMETEVLIVGRFLGIHQDVAKCNWSCMFGEVEVPAMVLANGILCCRAPPYTTGQVPFYVTFSNRLACSEVREFQYLAGSVKDVDVTDIYDGGTDELPLHLQLDSLLSLNYLGSPSNIFIDDLDKRNVIRKLIALKDEKDYIVEPDSQEELIQQEKKKYFFKILMKEMLYSWLLHKVVEDGKGPNVWDENGRGVIHLAAALGYDWAMKPIVSAGVSINFRDVNGWTALHWAAYYGREQTIAVLITLGGGAGLVTDPSPEHPLGRTPADLASANGHKGISGFLAESSMTSQLSTLTMNDTKRDSEDVSSTKVVHSVSERIATPANDGYLPGELSLKDSLTAVSHATQVADQIHLMIRMQSFQRKQFAEHNGDQFDHTLSIVAARALKGGQGNRLAHSAAIHIQKKFRGWKKRKEFLLIRQRIVKIQAHVRGHQVRKKYPSMTWSIGIVDTLLRWRRKGSGLRPMVVPKEPTSDSILEEEDDDFLKKGRRQTEERLQKALTRVKSMAQDPQGRDQYRRLLTLVHGIRENKVSGMAVTGSENRVDEELIDLDDILDDETLMSITFD 1067
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7231739 7246050 - Bpe005581.1 Bpe12g00329 112342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00329 1067 Pfam IPT/TIG domain 494 579 IPR002909 -
Bpe12g00329 1067 CDD IPT 494 581 - -
Bpe12g00329 1067 ProSiteProfiles Ankyrin repeat region circular profile. 727 751 - -
Bpe12g00329 1067 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 5 1067 - -
Bpe12g00329 1067 SUPERFAMILY Ankyrin repeat 677 788 IPR036770 -
Bpe12g00329 1067 SMART CG_1_2 18 136 IPR005559 GO:0003677
Bpe12g00329 1067 ProSiteProfiles IQ motif profile. 898 927 IPR000048 GO:0005515
Bpe12g00329 1067 Coils Coil 991 1011 - -
Bpe12g00329 1067 ProSiteProfiles IQ motif profile. 921 945 IPR000048 GO:0005515
Bpe12g00329 1067 SMART iq_5 897 919 IPR000048 GO:0005515
Bpe12g00329 1067 SMART iq_5 920 942 IPR000048 GO:0005515
Bpe12g00329 1067 Gene3D - 898 945 - -
Bpe12g00329 1067 SUPERFAMILY E set domains 495 580 IPR014756 -
Bpe12g00329 1067 Gene3D Immunoglobulins 488 584 IPR013783 -
Bpe12g00329 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 895 947 IPR027417 -
Bpe12g00329 1067 MobiDBLite consensus disorder prediction 144 181 - -
Bpe12g00329 1067 Pfam Ankyrin repeats (3 copies) 699 788 IPR002110 GO:0005515
Bpe12g00329 1067 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Bpe12g00329 1067 SMART ANK_2a 694 723 IPR002110 GO:0005515
Bpe12g00329 1067 SMART ANK_2a 727 759 IPR002110 GO:0005515
Bpe12g00329 1067 SMART ANK_2a 766 795 IPR002110 GO:0005515
Bpe12g00329 1067 ProSiteProfiles Ankyrin repeat profile. 727 759 IPR002110 GO:0005515
Bpe12g00329 1067 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Bpe12g00329 1067 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 5 1067 - -
Bpe12g00329 1067 Pfam IQ calmodulin-binding motif 923 941 IPR000048 GO:0005515
Bpe12g00329 1067 Pfam IQ calmodulin-binding motif 899 918 IPR000048 GO:0005515
Bpe12g00329 1067 Gene3D - 655 797 IPR036770 -
Bpe12g00329 1067 MobiDBLite consensus disorder prediction 142 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00329 K21596 CAMTA; calmodulin-binding transcription activator - csv:101203707 1214.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00883 Bpe-Chr4:5911879 Bpe12g00329 Bpe-Chr12:7231739 2.63E-45 dispersed
Bpe12g00329 Bpe-Chr12:7231739 Bpe15g00767 Bpe-Chr15:18012290 2.64E-07 dispersed
Bpe12g00329 Bpe-Chr12:7231739 Bpe05g00947 Bpe-Chr5:22392835 2.87E-34 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00329 . 1 1067 CAMTA Transcription Factor Family AT5G64220 50.7 5.3e-254 874.4
Bpe05g00817 CCT 24 169 CAMTA Transcription Factor Family AT5G64220 51.4 1.8e-36 151.8
Bpe04g01108 CCT 12 900 CAMTA Transcription Factor Family AT3G16940 53.5 1.4e-257 885.9
Bpe12g00329 . 18 158 CAMTA Transcription Factor Family AT3G16940 54.6 7.5e-38 156.0
Bpe04g01108 CCT 1 625 CAMTA Transcription Factor Family AT4G16150 52.6 3.0e-192 669.1
Bpe12g00329 . 1 1067 CAMTA Transcription Factor Family AT5G64220 50.7 5.3e-254 874.4
Bpe05g00817 CCT 24 169 CAMTA Transcription Factor Family AT5G64220 51.4 1.8e-36 151.8
Bpe04g01108 CCT 1 625 CAMTA Transcription Factor Family AT4G16150 52.6 3.0e-192 669.1
Bpe04g01108 CCT 12 900 CAMTA Transcription Factor Family AT3G16940 53.5 1.4e-257 885.9
Bpe12g00329 . 18 158 CAMTA Transcription Factor Family AT3G16940 54.6 7.5e-38 156.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22187 PF03859 CG-1 4.90E-50 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00329 Bpe_Chr12 FPKM 11.62485 11.61469 9.515342 9.574587 18.974287 13.756207 16.667984 6.835078 6.179267 7.247311