Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00342 GCGGCTGAATTGGTTGGGCCTCGGTTGTATAGCTGTTGTAATTGTAGAAACCATGTTGCGCTTCACGATGATATCATTTCTAAAGCTTTTCAGGGAAGAAATGGGCGAGCTTTTCTGTTCTCCCACGCAATGAACCTGTCGGTTGGACCAAAAGAAGACAGACATCTGATGACGGGTCTGCACACGGTGGCTGATGTTTACTGCGGGGATTGCCGAGAGGTTCTGGGTTGGAAGTATGAGCGAGCTTACGAGGCTTCCCAGAAGTACAAGGAAGGGAAATTCATCCTGGAGAAGTCCAAAATTGTGAAGGAGAATTGG 318 48.11 AAELVGPRLYSCCNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNLSVGPKEDRHLMTGLHTVADVYCGDCREVLGWKYERAYEASQKYKEGKFILEKSKIVKENW 106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8512717 8513333 + Bpe024888 Bpe12g00342 112355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00342 106 ProSiteProfiles Yippee domain profile. 8 105 IPR034751 -
Bpe12g00342 106 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 10 102 IPR004910 -
Bpe12g00342 106 PANTHER PROTEIN YIPPEE-LIKE 2 106 - -
Bpe12g00342 106 PANTHER PROTEIN YIPPEE-LIKE CG15309-RELATED 2 106 IPR039058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00342 - - - qsu:112023683 214.927
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00465 Bpe-Chr11:3599735 Bpe12g00342 Bpe-Chr12:8512717 2.09E-31 dispersed
Bpe12g00342 Bpe-Chr12:8512717 Bpe15g01151 Bpe-Chr15:20438454 1.30E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1006 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00034 Chy09g01450 . . . . . . Bpe12g00342 . . . . Cmo15g01077 . . . . . . Bhi12g00675 . . . Hepe06g0812 . . . . . . . . . . . . Cme09g01999
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002328 1 4 0 1 1 2 2 1 2 2 1 1 1 2 2 1 1 1 3 2 2 3 2 1 3 2 2 3 8 3 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00342 Bpe_Chr12 FPKM 1.896667 1.35966 0.976469 0.363501 0.429077 0.09208 0.288323 1.424704 1.41557 1.401832