Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00345 GTCATGGATAGCTTCAGCGACGACGAAGAATCTCGATTTTTTGATGCCCAAGAGGATATTGCGTCGTCTTCTGGAGCGAATAGGGATAGTTTTGAGGTTCAAAATTCTAATTTTGGTTTTAGCGCTGCCGTTGAGGGTAGTTTTGTTTATGATGTATGGAATCGAAGCCCTCTCAGTGTTAAAGAGCGCCGGACAAAGTTTTTGAGAATGATGGGACTAAGTTTAGATGGGATTTCCCTCGATAATTCTGTAGTTGGTTGGAGGGATTTGAGTGATGGAGAAGCGAGTACAATCAGGGAAAATGAAGGGTCTATGCTCGGAATTTCAGCTTTTGAAGATGGATTTTATTCGAGCCATTCATCAATGTTGTGTTACCCTAGTGATAGCCGTGGACTTTCAGAGAAATTGGGATCAAATTTGAATTTTGTAAGCAGCGACGAAACAAATGTTTGTAATCCGGGTAAGACAGGGGCGGCCAGGAGGCTTGGGATGGTGAATGAAGATGGCAGCTCAGTCGAGATGGGAATTGCCGAAAAGTATTCAAGCAGTTGTTCATCTCAATCGTCCCATAACCAGAAGGAAGCGGAAACTGGAAATCAAAGACGCTTCAAGTGTATGGTTAGAAGAGTCGATAAGAGTTGGCTGAGGAGATTACGCTCTATGACATGTATTTTTGATAACCAAGGAAAAGGACTTAAATTCATGTCAGATGATGACGCAGTTCGGCAGTTTAGAATTCAGAGAGTTAAGGTTCGGCAATGCAGGAAGCAACTGAAGGAACTTTCTGCTGTCTATATGGGTCATGATATTCAGGCACATGAAGGTGCAATATTGACCATGAAATTCAGCCTGGATGGGCAGTACCTGGCAAGTGGGGGTGAAGACAGGATTGTGAAAATTTGGCAAGTGATCCAGGACGAGAGGTCCAATGAAAGTGATATTCCAGAATTAGATCAATCGTGCATTTACTTTTCTGTGAATCAACTCTCTGAATTGAAACCTCTGCTTGTGGACAAAGAAAAACTTTGTGATTCAACAAGTTTGAAGAAAACATCAGAATCTGCTTGTGTCATTTTCCCACCCAAAATCTTTAGAATATTGGAGAAACCGTTGCACGAATTCCATGGTCATGGTTGTGAGATTTTGGATCTCTCGTGGTCACAGAACAATTATCTCCTTTCATCATCAGTTGACAAAACAGTTCGCCTTTGGCAAGTCGGAAGGGAAGATTGCCTCAAAGTGTTTTCACATAGCAATTACGTGACATGCGTGCACTTTAATCCCGTGGATGAAAATTACTTCATCAGTGGATCAATAGATGGAAAAGTACGGATCTGGGGAATCTCTTGTTCTCAAGTTGTTGATTGGATTGACATTAGAGAAATAGTCACTGCAGTGTGTTTTCGCCCTGATGGACAGGGAAGTGTTGTCGGCTCACTTGATGGAAGCTGCCGCTTTTATAATATATCAGAAAATCATCTGCAATTGGAAGATCAGATATGCTTACACAGCAAGAAGAAGGTAGTGTGTAAGAAGATAACAAGCTTTCAGTTTCTTCCTCAAGATTCAAGCATGGTAATGGTGAGCTGTGCTGATTCGAGAATCAGAATTCTTCATGGTCCTAAGGTGGTTGGTAAATACAAGGGAATTCGAATTGCTGGAAACCATATTTCTGCATCTTTTACGCCGGATGGTAAATATATTATCTCAGCTTGTGGGGATTCTAATGTATATGTATGGAACTGTGGCGACCAAAATGACAGTGCTTTATCTCAAACTAGTAAAAGTTATGAACACTTCTCCACCAATGCTTCCATTGCAATACCTTGGAGTGGTTTTGGATGCCATAATTCAAACAGTGGAAGGCAATTTTGTGCCTTGGACAAGAATTTACCAGAGCTTCTCCCTTTCTCTTCATCCCCATGTTTCTCACTGAACCAGGAATTCTTTCTAGAGTCTTTGCCTAAAGGGTCTGCTACTTGGCCCGAAGAGAAGCTTCCTACTTCGGTAAAGACATCAAGGATGCATAAATCTCAATACAAGTTTCTTGAGGAGTCTTGCCAGAACACATCTGGTTCCCATGCATGGGGTCTAGTTATTGTGACTGCCGGTTGGGACGGTCGCATAAGATCATTTCACAGTTATGGATTACCAGCACCAATTTGA 2166 41.87 VMDSFSDDEESRFFDAQEDIASSSGANRDSFEVQNSNFGFSAAVEGSFVYDVWNRSPLSVKERRTKFLRMMGLSLDGISLDNSVVGWRDLSDGEASTIRENEGSMLGISAFEDGFYSSHSSMLCYPSDSRGLSEKLGSNLNFVSSDETNVCNPGKTGAARRLGMVNEDGSSVEMGIAEKYSSSCSSQSSHNQKEAETGNQRRFKCMVRRVDKSWLRRLRSMTCIFDNQGKGLKFMSDDDAVRQFRIQRVKVRQCRKQLKELSAVYMGHDIQAHEGAILTMKFSLDGQYLASGGEDRIVKIWQVIQDERSNESDIPELDQSCIYFSVNQLSELKPLLVDKEKLCDSTSLKKTSESACVIFPPKIFRILEKPLHEFHGHGCEILDLSWSQNNYLLSSSVDKTVRLWQVGREDCLKVFSHSNYVTCVHFNPVDENYFISGSIDGKVRIWGISCSQVVDWIDIREIVTAVCFRPDGQGSVVGSLDGSCRFYNISENHLQLEDQICLHSKKKVVCKKITSFQFLPQDSSMVMVSCADSRIRILHGPKVVGKYKGIRIAGNHISASFTPDGKYIISACGDSNVYVWNCGDQNDSALSQTSKSYEHFSTNASIAIPWSGFGCHNSNSGRQFCALDKNLPELLPFSSSPCFSLNQEFFLESLPKGSATWPEEKLPTSVKTSRMHKSQYKFLEESCQNTSGSHAWGLVIVTAGWDGRIRSFHSYGLPAPI 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8523026 8526428 + Bpe005600.1 Bpe12g00345 112358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00345 721 ProSiteProfiles Trp-Asp (WD) repeats profile. 374 414 IPR001680 GO:0005515
Bpe12g00345 721 PANTHER WD REPEAT DOMAIN 44 7 720 IPR040324 -
Bpe12g00345 721 SMART WD40_4 367 405 IPR001680 GO:0005515
Bpe12g00345 721 SMART WD40_4 263 302 IPR001680 GO:0005515
Bpe12g00345 721 SMART WD40_4 408 447 IPR001680 GO:0005515
Bpe12g00345 721 SMART WD40_4 449 488 IPR001680 GO:0005515
Bpe12g00345 721 SMART WD40_4 546 581 IPR001680 GO:0005515
Bpe12g00345 721 SMART WD40_4 503 539 IPR001680 GO:0005515
Bpe12g00345 721 SUPERFAMILY WD40 repeat-like 268 711 IPR036322 GO:0005515
Bpe12g00345 721 Gene3D - 253 609 IPR015943 GO:0005515
Bpe12g00345 721 PRINTS G protein beta WD-40 repeat signature 392 406 IPR020472 -
Bpe12g00345 721 PRINTS G protein beta WD-40 repeat signature 289 303 IPR020472 -
Bpe12g00345 721 PRINTS G protein beta WD-40 repeat signature 434 448 IPR020472 -
Bpe12g00345 721 ProSiteProfiles Trp-Asp (WD) repeats profile. 558 581 IPR001680 GO:0005515
Bpe12g00345 721 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 7 720 - -
Bpe12g00345 721 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 311 IPR001680 GO:0005515
Bpe12g00345 721 ProSiteProfiles Trp-Asp (WD) repeats profile. 414 449 IPR001680 GO:0005515
Bpe12g00345 721 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 270 303 - -
Bpe12g00345 721 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 374 406 - -
Bpe12g00345 721 Pfam WD domain, G-beta repeat 369 404 IPR001680 GO:0005515
Bpe12g00345 721 Pfam WD domain, G-beta repeat 410 446 IPR001680 GO:0005515
Bpe12g00345 721 Pfam WD domain, G-beta repeat 270 301 IPR001680 GO:0005515
Bpe12g00345 721 Pfam WD domain, G-beta repeat 556 581 IPR001680 GO:0005515
Bpe12g00345 721 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 414 449 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00345 - - - qsu:112008846 850.121
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe03g00197 Bpe12g00345 CCT
Bpe07g01024 Bpe12g00345 CCT
Bpe03g00197 Bpe12g00345 ECH
Bpe07g01024 Bpe12g00345 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00197 Bpe-Chr3:2329303 Bpe12g00345 Bpe-Chr12:8523026 0 dispersed
Bpe07g01024 Bpe-Chr7:15814925 Bpe12g00345 Bpe-Chr12:8523026 0 dispersed
Bpe11g00491 Bpe-Chr11:3780889 Bpe12g00345 Bpe-Chr12:8523026 6.88E-117 dispersed
Bpe12g00345 Bpe-Chr12:8523026 Bpe13g00025 Bpe-Chr13:551870 3.65E-121 dispersed
Bpe12g00345 Bpe-Chr12:8523026 Bpe10g00239 Bpe-Chr10:8819226 3.77E-123 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1012 . Blo15g00080 Bda05g00130 Bda07g01942 Bpe03g00197 Bpe07g01024 Bma10g01307 Bma14g02015 . . Cma02g01133 Cma15g01017 Car02g00936 Car15g00952 . Cpe05g00590 . . . . . . . . Cla01g00031 . Cec01g0028 Cco01g0030 Clacu01g0030 Cmu01g0029 Cre09g2477 Cone1ag0999 Cone5ag0704 . . . . . . Blo07g00327 Blo09g00017 Bda06g00793 Bda15g00789 . Bpe12g00345 Bma08g00392 Bma12g01219 . Cmo02g01161 Cmo15g01081 . . . . . Cpe13g00320 Bhi12g00667 . . . Hepe06g0808 . . . . . . . . . Lsi09g00011 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003050 4 4 3 4 3 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00345 Bpe_Chr12 FPKM 2.04932 2.955848 35.948685 30.955378 488.181 331.347046 438.023224 2.123832 1.455229 1.308768