Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00350 ATGGATTCTCTGCATGTTGCTCTTCTTTCATGCCCACCATCCTTTAATACTAAACTGTCAAGAACTTGCCTTACTTCTGGAGTGATCACTCGCCTCTTTCAAATTCCTCTAGCCAGGAAGACTCGTTCTATCGGTCTTTTAAAGCTTACTGCTTCGATTTCGGGTGGAAGGGCATGTGATGTTGGTGGGTATCCGGATGGGTCTTATGACATCGAAGACAATAACAAGGAAAAAAAGGGTTTCATCATCGATTCTGAGAGAGATGCTTCTGGCTCTGTGGTTGGGTTTAATTTGATTTCTAAACCTGGTGGAAATAATGAAGAAGTGGTCTTAAATAAAGACTTGAAAGCTGATACAGGTCCAGATCAGGAGAAGAAGGAAGAAAAGCCACATGTTAAAGTAACATACAATGTTATCTTTGTAACCTCTGAAGCATCACCATACTCAAAGACGGGAGGCTTGGGAGATGTTTGTGGTTCCTTACCAATAGCTTTAGCTGCCCGTGGACACAGAGTGATGGTAGTTTGTCCTAGATACCTCCATGGCACTCCCGCTGACAAAAAATTTGCCAGGGCTGTCGATTTGGATACTCGCGTCAAGTTATATTGCTTTGGAGGAGAGCAAGAAGTAGCTTTCTTTCATGAATACAGAGAGGGTGTTGATTGGGTATTTGTGGATCACCCTTCATACCAAAGACCTGGAAATCCATATGGGGACGTGTATGGTGCATTTGGCGACAATCAGTTTCGGTTCACTTTACTTTGCCATGCTGGATGTGAAGCTCCTCTAGTGCTTCCTTTGGGTGGATTCACCTATGGGGAGAAATGTCTTTTCCTTGTCAATGACTGGCATGCGGGACTTGTGCCATTACTTTTGGCAGCCAAGTATAGGCCACATGGAACTTATAAGGATGCCAGAAGCATCCTCGTCATCCACAATCTCGCTCATCAGGGCGTTGAACCTGCAGTGACGTACAAGAATATCGGACTCCCAATAGAGTGGTATGGAGCCCTGGAATGGGTATTCCCAACCTGGGCAAGAACACATGCTTTCGACACTGGTGAAGCCGTCAATATTTTAAAGGGTGCGGTTGTGACAGCTGATCGCATTTTGACTGTTAGCAAGGGTTATTCTTGGGAAATTACGACAGCAGAAGGTGGATATGGCTTACAAGATTTATTAAGCAGTCGAAAGAGTGTTCTTGATGGGATTACAAATGGAATCGATGTTTTTGAATGGAATCCATCTTCAGATGTACATATTCCCTCCCATTATTCTCTTGAGGATCTTTCTGGAAAGGTTAAATGCAAGATTGCTCTGCAAAAGGAATTAGGTCTTCCAATTAAGCCCAGTTGCCCATTGATTGGATTCATTGGACGACTTGACTATCAAAAAGGCATTAACTTGATTCAGGCGGCTATGCCTGAGCTTATGGAAGGAGACGTGCAATTTGTTATGCTTGGTTCTGGTGATTCACAGTATGAATCCTGGATGAGAGCAACCGAGTTGGCTTATAGACACAAGTTCCGAGGTTGGGTGGGATTTAACGTTCCAATTTCTCATAGGATAACAGCAGGCTGTGACATATTGTTAATGCCTTCGATATTCGAGCCATGCGGACTAAACCAATTGTATGCAATGAGATATGGAACTGTCCCAGTGGTTCATAACACGGGAGGACTACGAGATACGGTCTTGAATTTCGATCCGTATGCACAGAAAGGACACGGTACGGGGACTGGGTGGACTTTTTCGCCACTGACAAAAGAGAGTATGTTGGGGGCGTTGAGGCTGGCGATCATGACTTACTGGGATCATAAGTCTTCATGGGAGGGATTGATGAAGAGAGGTATGCAGAGGGATTGCTCCTGGGAAAATGCTGCCATCCAGTATGAACAGGTGTTCCAATGGGCTTTCATTGATCCTCCGTATTGTAAT 1938 44.43 MDSLHVALLSCPPSFNTKLSRTCLTSGVITRLFQIPLARKTRSIGLLKLTASISGGRACDVGGYPDGSYDIEDNNKEKKGFIIDSERDASGSVVGFNLISKPGGNNEEVVLNKDLKADTGPDQEKKEEKPHVKVTYNVIFVTSEASPYSKTGGLGDVCGSLPIALAARGHRVMVVCPRYLHGTPADKKFARAVDLDTRVKLYCFGGEQEVAFFHEYREGVDWVFVDHPSYQRPGNPYGDVYGAFGDNQFRFTLLCHAGCEAPLVLPLGGFTYGEKCLFLVNDWHAGLVPLLLAAKYRPHGTYKDARSILVIHNLAHQGVEPAVTYKNIGLPIEWYGALEWVFPTWARTHAFDTGEAVNILKGAVVTADRILTVSKGYSWEITTAEGGYGLQDLLSSRKSVLDGITNGIDVFEWNPSSDVHIPSHYSLEDLSGKVKCKIALQKELGLPIKPSCPLIGFIGRLDYQKGINLIQAAMPELMEGDVQFVMLGSGDSQYESWMRATELAYRHKFRGWVGFNVPISHRITAGCDILLMPSIFEPCGLNQLYAMRYGTVPVVHNTGGLRDTVLNFDPYAQKGHGTGTGWTFSPLTKESMLGALRLAIMTYWDHKSSWEGLMKRGMQRDCSWENAAIQYEQVFQWAFIDPPYCN 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8549655 8553982 - Bpe024889 Bpe12g00350 112363

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00350 646 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 73 645 - -
Bpe12g00350 646 Gene3D Glycogen Phosphorylase B; 410 621 - -
Bpe12g00350 646 TIGRFAM glgA: glycogen/starch synthase, ADP-glucose type 137 636 IPR011835 GO:0004373
Bpe12g00350 646 Hamap Glycogen synthase [glgA]. 136 638 IPR011835 GO:0004373
Bpe12g00350 646 Gene3D Glycogen Phosphorylase B; 156 635 - -
Bpe12g00350 646 CDD GT5_Glycogen_synthase_DULL1-like 137 637 - -
Bpe12g00350 646 Pfam Glycosyl transferases group 1 453 592 IPR001296 GO:0016757
Bpe12g00350 646 Pfam Starch synthase catalytic domain 137 395 IPR013534 -
Bpe12g00350 646 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 127 634 - -
Bpe12g00350 646 PANTHER STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 73 645 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00350 K00703 glgA; starch synthase [EC:2.4.1.21] - qsu:112034608 969.533
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01454 Bpe-Chr2:17890816 Bpe12g00350 Bpe-Chr12:8549655 2.56E-154 dispersed
Bpe10g00033 Bpe-Chr10:474345 Bpe12g00350 Bpe-Chr12:8549655 1.39E-24 dispersed
Bpe12g00350 Bpe-Chr12:8549655 Bpe14g00174 Bpe-Chr14:2122565 4.27E-156 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1036 Blo06g01059 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag0986 Cone5ag0692 . . . . . . . . . Bda15g00786 . Bpe12g00350 Bma08g00388 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016620 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 7
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00350 Bpe_Chr12 FPKM 35.604271 37.645512 32.588791 32.114773 24.842775 26.08568 28.258169 58.394432 56.705341 61.874634