Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00353 ATGGCGATCATTTCAGATTTCCAGGAAGAGGAATCCCCCAAGCCCAGCAAAGCCTCCTCTTCATCTTCATCCGCTAAGATGCTGCCATTTAAGGAGTCTTTGGACCCTTCAAGCCCTCTAGCTTTTTTGCAAAAAGTGTTTGATTTTCTTGCCCGAGAAAGCGACTTTTTACTCGACGAAGCGACTGATAACGAAATCTTGTCGTTGGTGCACGCTGCTCGGGAGGAGAAGAAGAAGAGACACGACGCATTGGAACAAAGTAGAAAGGCCGAGAAGAGGGTGAAAGAGGAGGCGCTAAAGGAGAATAAGAAAATCAAGGAGGCGGAGACTGTGGCGCTGCCGAAGCAAGAAGACGTCTGCCACGAACCTGATAATGATGGCGGCAAGAGAGTTCCCAACAAAGGCAATGGCCTTGATCTAGACAAATACTCCTGGACCCAGACCCTCCAAGAAGTTACTGTTAATTTGCCGGTGCCAAAGGGAACTAAGTCCAGGTTTGTTGTGTGCGAGATAAAGAAGGATCATCTGAAAGTAGGACTTAAGGGACAGCCTCCTGTAATTGATGGAAAGCTTCATCAGTTGGTCAAACCTGATGATTGTTATTGGAGCATAGAGGACCAGAGCGCCATCTCTATTCTTTTGACCAAACACAACCAAATGGAGTGGTGGAAGTCATTGGTGAAAGGTGATCCTGCAATTGATACTCAGAAGGTTGAACCAGAGTCCAGTAAACTATCTGACCTAGATCCAGAAATGCGCCAAACTGTTGAAAAGATGATGTTTGATCAAAGGCAAAAGTCTATGGGCCTGCCAACCAGTGATGAAATGCAGAAGCAAGAGATTTTGAAGAAGTTTATGGCTGAGCATCCGGAGATGGATTTTTCAAGGGCCAAGATATCATAG 903 45.96 MAIISDFQEEESPKPSKASSSSSSAKMLPFKESLDPSSPLAFLQKVFDFLARESDFLLDEATDNEILSLVHAAREEKKKRHDALEQSRKAEKRVKEEALKENKKIKEAETVALPKQEDVCHEPDNDGGKRVPNKGNGLDLDKYSWTQTLQEVTVNLPVPKGTKSRFVVCEIKKDHLKVGLKGQPPVIDGKLHQLVKPDDCYWSIEDQSAISILLTKHNQMEWWKSLVKGDPAIDTQKVEPESSKLSDLDPEMRQTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8621821 8624081 + Bpe005608.1 Bpe12g00353 112366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00353 300 Pfam CS domain 142 216 IPR007052 -
Bpe12g00353 300 ProSiteProfiles CS domain profile. 138 227 IPR007052 -
Bpe12g00353 300 PANTHER NUCLEAR MIGRATION PROTEIN NUDC 19 300 - -
Bpe12g00353 300 PANTHER NUCLEAR MOVEMENT PROTEIN NUDC 19 300 IPR037898 -
Bpe12g00353 300 Coils Coil 73 108 - -
Bpe12g00353 300 MobiDBLite consensus disorder prediction 1 31 - -
Bpe12g00353 300 Gene3D - 134 261 IPR008978 -
Bpe12g00353 300 MobiDBLite consensus disorder prediction 75 96 - -
Bpe12g00353 300 CDD p23_NUDC_like 143 227 - -
Bpe12g00353 300 MobiDBLite consensus disorder prediction 14 28 - -
Bpe12g00353 300 SUPERFAMILY HSP20-like chaperones 129 241 IPR008978 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00353 K25866 NUDC; nuclear migration protein NudC - csv:101222013 397.127
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00724 Bpe-Chr11:5553017 Bpe12g00353 Bpe-Chr12:8621821 2.33E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g914 . . . . . . . . . . . . . . . Cpe05g00602 . . . . . . . . . . . . . . . . . . . . . Chy09g01436 . . . . . . Bpe12g00353 . . . . . . . . . . Cpe13g00313 Bhi12g00632 . . Lac11g0151 Hepe06g0789 . Lcy12g0130 . . . . . . . Lsi09g00024 . . Cme09g01982
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006262 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00353 Bpe_Chr12 FPKM 14.163815 18.147486 1.950428 1.872365 12.844485 13.597837 12.697629 2.595036 2.340524 2.140198