Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00362 ATGAGAGCTTATTCTGCTTGCGGAGAAATCATAGCTGCACGCAAGCTGTTCGATGGAAGTCCCCACAGAAATGTCGTCTTCTTCAATGTGATGATAAGAAGCTATATAAACAATGACTTTCATCACGAGGCTATTCTTGTTTATCAAACTATGTCAAAATTTGGTTGCAGTCCCGATCATTATACGTATCCATGTGTATTGAAGGCATGTTCTGCAACTAATAGTTTAAGGCTTGGTTTACAAATTCATTGTACTGTCCTAGAAATTGGACTTGACTCTAATCTGTTTATTGGAAATGGTTTGATATCCATGTATGGCAAATGTGGTTGTTTAGATGAGGCTCGGAAAATGCTCGATGAAATGCCGAGTAGAGATATTGTTTCGTGGAACTCAATGGTTGCTGGATACGCACAAAACAAACGCTTTGACGATGCATTTCAAATCTGCAGAGAAATGGAGTCTTTGAAATTAAAGCCCGACAATGGAACAATGGCTAGCCTCTTGCCTGCAGTCAATAACACTTCATCCGACCATATTTCTTATGTTCATGAAATGTTTATGAAGTTGGGTAAAAAGAGTTTAGTTTCATGGAATGTGATGATTGCAATATATGTTAATAATTCGATGCCTGCTCAATCTGTTGATCTATTCGAACAAATGGAAGCTTGTGATATCCAACCAGATGCAATTACAATTGCAAGTATTCTTCCGGCTTGTGGAGATCTTTCTGCTATGTTGCTTGGAAGGCGACTTCATGAATGTATTGAAAGGAAAAAACTTAGGCCAAACTTATTGTTGGAAAATGCGTTAATTGATATGTATGCTAAGTGTGGATGCTTACAGGCTGCAAGAGAGGTGTTTGAAAAAATGAGGTTACGAGACATAGTTTCATGGACTTCAATGATCTCTGCGCATGGAAGATGTGGTGAAGGCAGAGCTGCAATAGCTCTATTTGTAGCAATGCAAAAATCCGGGCTGAGCCCAGATTCAATTGCCTTTGTTTCTGTTCTCTCGGCCTGTAGCCATGCTGGATTAGTAAATGAAGGTCGATATTTCTTTCACATGATGACTGAAAGATATGGTATACTTCCTACAATTGAGCATTGTGCTTGTATGGTTGATCTGTTAGGACGAGGTGGTCTAGTAGAAGAGGCTTATAGTTTCATTAACAAGATGCCAATGGAGCCGAACGAAAGAGTGTGGGGGGCACTCTTGAGTGCTTGTCGGATCCATTCCAACACAAAGATTGGCATTCTGGCTGCTGATTGTCTTCTCTGTCTGGCTCCGAGAGAATCTGGGTATTATGTTTTGCTTTCAAATATTTACGCCAAGGCTGGTCAGTGGCAAAACGTGGCAAAAGTCAGATCCATGATGAAAATTAGAAAAATAAAGAAATCACCTGGGATCAGTAATATTGAGCTCAACAGGCGGGTTTACACGTTTCTAGCTGGTGATCAGTCTCATGTGCAATCGAAAGAGATATATGAAGAGTTGGATGTATTAGTTGGGAAGATGAAAGAGATGGGTTATGTGCCTGAGACAGACTCAGCACTTCATGATGTTGAGGAAGAAGATAAGGAACACCATTTAGCAGTTCATAGTGAGAAACTGGCAATTGTCTTTGCCATTTTAAATACACTTCCAGGGACACAGATTCAAATCACTAAGAATCTCCGGGTCTGTGGTGATTGCCATGTCGCTGCTAAGCTTATTTCCAAAATAACTTGCCGTGAAATTATCATTCGAGACACTCATCGTTTCCACCATTTCAACAATGGGATTTGCTCTTGTGGAGATTATTGGTGA 1806 40.2 MRAYSACGEIIAARKLFDGSPHRNVVFFNVMIRSYINNDFHHEAILVYQTMSKFGCSPDHYTYPCVLKACSATNSLRLGLQIHCTVLEIGLDSNLFIGNGLISMYGKCGCLDEARKMLDEMPSRDIVSWNSMVAGYAQNKRFDDAFQICREMESLKLKPDNGTMASLLPAVNNTSSDHISYVHEMFMKLGKKSLVSWNVMIAIYVNNSMPAQSVDLFEQMEACDIQPDAITIASILPACGDLSAMLLGRRLHECIERKKLRPNLLLENALIDMYAKCGCLQAAREVFEKMRLRDIVSWTSMISAHGRCGEGRAAIALFVAMQKSGLSPDSIAFVSVLSACSHAGLVNEGRYFFHMMTERYGILPTIEHCACMVDLLGRGGLVEEAYSFINKMPMEPNERVWGALLSACRIHSNTKIGILAADCLLCLAPRESGYYVLLSNIYAKAGQWQNVAKVRSMMKIRKIKKSPGISNIELNRRVYTFLAGDQSHVQSKEIYEELDVLVGKMKEMGYVPETDSALHDVEEEDKEHHLAVHSEKLAIVFAILNTLPGTQIQITKNLRVCGDCHVAAKLISKITCREIIIRDTHRFHHFNNGICSCGDYW 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8864577 8866382 - Bpe005618.1 Bpe12g00362 112375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00362 601 Pfam PPR repeat 371 393 IPR002885 -
Bpe12g00362 601 Pfam E+ motif 478 503 IPR046849 -
Bpe12g00362 601 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 1 594 - -
Bpe12g00362 601 Pfam DYW family of nucleic acid deaminases 509 601 IPR032867 GO:0008270
Bpe12g00362 601 Gene3D Tetratricopeptide repeat domain 193 524 IPR011990 GO:0005515
Bpe12g00362 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
Bpe12g00362 601 Gene3D Tetratricopeptide repeat domain 1 77 IPR011990 GO:0005515
Bpe12g00362 601 Gene3D Tetratricopeptide repeat domain 78 192 IPR011990 GO:0005515
Bpe12g00362 601 Pfam PPR repeat family 125 168 IPR002885 -
Bpe12g00362 601 Pfam PPR repeat family 23 70 IPR002885 -
Bpe12g00362 601 Pfam PPR repeat family 294 341 IPR002885 -
Bpe12g00362 601 Pfam PPR repeat family 193 239 IPR002885 -
Bpe12g00362 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 94 124 IPR002885 -
Bpe12g00362 601 TIGRFAM PPR: pentatricopeptide repeat domain 296 330 IPR002885 -
Bpe12g00362 601 TIGRFAM PPR: pentatricopeptide repeat domain 268 296 IPR002885 -
Bpe12g00362 601 TIGRFAM PPR: pentatricopeptide repeat domain 99 127 IPR002885 -
Bpe12g00362 601 TIGRFAM PPR: pentatricopeptide repeat domain 195 229 IPR002885 -
Bpe12g00362 601 TIGRFAM PPR: pentatricopeptide repeat domain 127 160 IPR002885 -
Bpe12g00362 601 TIGRFAM PPR: pentatricopeptide repeat domain 332 365 IPR002885 -
Bpe12g00362 601 TIGRFAM PPR: pentatricopeptide repeat domain 28 59 IPR002885 -
Bpe12g00362 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 24 58 IPR002885 -
Bpe12g00362 601 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 594 - -
Bpe12g00362 601 Pfam E motif 411 473 IPR046848 -
Bpe12g00362 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
Bpe12g00362 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00362 - - - qsu:111985439 927.932
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00121 Bpe-Chr1:714138 Bpe12g00362 Bpe-Chr12:8864577 1.42E-19 dispersed
Bpe12g00362 Bpe-Chr12:8864577 Bpe01g00489 Bpe-Chr1:3108510 7.60E-39 dispersed
Bpe12g00362 Bpe-Chr12:8864577 Bpe02g01078 Bpe-Chr2:13895334 3.41E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g843 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda15g00769 . Bpe12g00362 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g884 . . . . . . . . . . . . . . . . . Bhi01g01473 . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe12g00362 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011603 1 1 1 1 1 0 1 1 0 1 1 0 1 1 1 1 1 0 0 1 1 1 1 0 0 1 0 0 0 1 20
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00362 Bpe_Chr12 FPKM 1.474713 1.835496 0.117548 0.106055 3.902283 3.188223 3.721731 0.0 0.0 0.0