Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00370 ACGAAGAGGATGGTGGCATCGGAGCGAATCAACGGTTTTTGGATGAGTGCCGAGCAAACTCGGAAATTTGGAATTGGTGGCCCCGATTCTTCTGTTTTTGGATCATTTGTTAGGGATGGAGAGGGAGAGTGCGTTGGTTTTCCTGTTGCTCAGGCTCAGCGTTCGATCGAGAATGCCTCTCATGAAAATTTGGGTTTTGTAGAGAGAGCTGTCTCTGCTGCGGGCGCTGCGTTTCTCTCTGCGATTATTGTTAATCCTCTTGACGTGGTCAAGACAAGGTTGCAAGCACAGGCTGCTGGAGTGCCTTATTCACATCCTCTAAGTAATGTTACAAGTCGCATGGCATTTTTTGGACCAAACACGATGTTTGCAGATTTACGGTGTTCCCCATCATGTAGCCGTGCTGCTGTGCACGGGACAGTGTCAATATGTCCTCCTGATTGTTTTCAGTATAAAGGGACTTTAGACGTCTTCTACAAGATAGTTCGACAGGAAGGATTTGCAAGGTTGTGGAGAGGCACAAATGCTGGATTAGCACTTGCCATACCGACGGTGGCGATTTACCTACCTTGTTATGACATGTTTAGAAACTGGTTAGAAGAAGTTGCTGCTCAGAATGCTCCAAGTACTACTCCATATGTTCCCTTAGTTGCTGGCTCATTGGCTCGTTCATTGGCTTGTGCAACTTGCTATCCCATTGAACTTGCTAGAACACGCATGCAGGCTTTCAAGGAGACCAAAATAGGAAAGAAGCCTCATGGAGTTTGGAAGACTCTACTGAGCATCATGTCTAATGTCAAGAATACTGCCAGCGCAGAAGCCTCCGCAGTGCAAGGGTACCGGGTGTTGTGGACTGGAATGGGAGCACAGCTTGCTCGTGATGTTCCTTTCTCTGCAATTTGTTGGTCAACCCTCGAGCCAGTTCGAAGAAAGCTACTTGGTTTGGTTGACGAAGCTAATGTTGGCAGTGTTCTTGGGGCAAATTTTTCTGCTGGTTTTGTTGCGGGAAGTCTTGCTGCTGCTGCCACTTGTCCTTTAGATGTTGTCAAAACCAGAAGGCAGATAGAGAAAGATCCGGTCAGGGCATCGAGAATGACAACCAGGAATACATTAATGGAGATTTGGAGAGTTGGTGGAATGAAGGGCCTATTCACTGGAGTTGGACCACGCGTAGGCAGGGCCGGGCCGTCGGTTGGAATTGTGGTTTCTTTCTATGAAGTAGTGAAACACGTTCTGCATCACCATTATGCAACCTAG 1257 47.49 TKRMVASERINGFWMSAEQTRKFGIGGPDSSVFGSFVRDGEGECVGFPVAQAQRSIENASHENLGFVERAVSAAGAAFLSAIIVNPLDVVKTRLQAQAAGVPYSHPLSNVTSRMAFFGPNTMFADLRCSPSCSRAAVHGTVSICPPDCFQYKGTLDVFYKIVRQEGFARLWRGTNAGLALAIPTVAIYLPCYDMFRNWLEEVAAQNAPSTTPYVPLVAGSLARSLACATCYPIELARTRMQAFKETKIGKKPHGVWKTLLSIMSNVKNTASAEASAVQGYRVLWTGMGAQLARDVPFSAICWSTLEPVRRKLLGLVDEANVGSVLGANFSAGFVAGSLAAAATCPLDVVKTRRQIEKDPVRASRMTTRNTLMEIWRVGGMKGLFTGVGPRVGRAGPSVGIVVSFYEVVKHVLHHHYAT 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8973396 8977705 + Bpe005626.1 Bpe12g00370 112383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00370 418 Pfam Mitochondrial carrier protein 64 200 IPR018108 -
Bpe12g00370 418 Pfam Mitochondrial carrier protein 327 414 IPR018108 -
Bpe12g00370 418 Pfam Mitochondrial carrier protein 211 312 IPR018108 -
Bpe12g00370 418 ProSiteProfiles Solute carrier (Solcar) repeat profile. 210 311 IPR018108 -
Bpe12g00370 418 Gene3D Mitochondrial carrier domain 125 416 IPR023395 -
Bpe12g00370 418 ProSiteProfiles Solute carrier (Solcar) repeat profile. 323 411 IPR018108 -
Bpe12g00370 418 PANTHER FI19922P1-RELATED 50 417 IPR045315 GO:1990542
Bpe12g00370 418 PANTHER BNACNNG35730D PROTEIN 50 417 - -
Bpe12g00370 418 Gene3D Mitochondrial carrier domain 2 115 IPR023395 -
Bpe12g00370 418 ProSiteProfiles Solute carrier (Solcar) repeat profile. 64 198 IPR018108 -
Bpe12g00370 418 SUPERFAMILY Mitochondrial carrier 62 407 IPR023395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00370 K15119 SLC25A39_40; solute carrier family 25, member 39/40 - tcc:18605709 607.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00370 Bpe-Chr12:8973396 Bpe13g00659 Bpe-Chr13:13400047 1.46E-22 dispersed
Bpe12g00370 Bpe-Chr12:8973396 Bpe14g00958 Bpe-Chr14:7098271 7.21E-140 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g853 . . . . . . . . . . . Cma15g01041 . Car15g00971 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe12g00370 . . . . Cmo15g01101 . . . . . . Bhi12g00610 . . . . . . . . . . . . . Lsi09g00041 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003249 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 11 3 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00370 Bpe_Chr12 FPKM 8.567734 9.025363 23.421549 23.444651 26.911945 23.041336 25.55847 46.25703 47.343994 48.083786