Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00371 ATGGGCACTTTCCAGTTTCTCAGGCAATATCTTTCGCTATCTTACAGAAGGCCTCTCATATCTACGATTGATGGAGTTTTCTTCTTCGCTGTTTGTCCTAAACAACGATTAAGCACTAGCTCAGAAGACCCAGAGCTGAAGGACTTCATGGACTACCTGGATTTGCTCAAGAACTACGAGAAATTGGGAGTGCCTAAAGGCGCTGGTACGGACTCAGAGGATGGATTCGATTTAGGTCGGATGAAGAGGCTATTGGAGCGACTGGGTAATCCTCTCTCAAAGCTATTCACATTGCGGGGACGAAGGGTAAAGGATCAACTGCTGCATTTCTGGCCAACATCTTACGAGCAGAAGGATATAATGTTGGTTCTTATACCAGGTATTATGATCTTCATCTTTCTTTCAATTCTTTCTGACCATAGCCTCTATTTTTCCATGCCCAGCCCACATATTCAGACTATCAGGGAAAGAATATCGATTGGAAGGTCTGGTGAATTGGTCTCAGCAAAGACTCTAAATTGCATTTTCAATAAGAATAAAATGATCCTTGACCGGTCCATGGAACTTGAAAATGGACGTTTGAGTCACTTTGAGTTTATTCAGGTCCTCACCGCTATGGCATTTGCTTTATTTGCTCAGGAAAATGTTGATATTGCAGTAGTTGAGGCAGGGTTGGGAGGTGCCCGAGATGCAACGAATGTGATTTGCAGCTCAGGACTTGCTCTTTCGATCATAACCTCGATAAGTGAAGAACATTTGGCTGCACTTGGGGGCTCTTTAGAAAGCATTGCAGCGGCAAAGGCTGGGATTATTAAACATCAATGCCCAGTAGTTCTCGGTGGACCACTTCTCCCACACATTGAGCGCATTTTTCGCAATAAAGCATCATCCATGTGTTCACCGGTGGTGTCAGCATCAGATGCTGGAAGGAAATGCACCGTGAAAAGCATTAGCGTGTCTGATGGCAGACTTTGTCAAACTTGTGATATTGTGATTCAAACAGAGAATAGTTTTGAGCTGTTCTTTGAATTATCGGATGTCAAACTACTCATGATTGGTAGTCATCAACTTCACAATGCGGTAACTGCAACTTGTGCTGCACTTTGTCTTCAAAAGTTAGGATGGAAATTATCAGATGGGTCGATACACACTGGTTTAGAGGAAACGTTTTTGATTGGAAGAGGTCAAATATTATCATCCAAGGAAGTTGCAGCTTTAGGACTTTCTGGAGTGAGGATATTGCTTGATGGAGCTCATACGAAAGAATCCGCTATTGCCTTGATGAAAACCATCAACATGGCGTTTCCCTATGAGCATTTGGTTCTCGTGGTTGCTATGGCTAGTGACAAAGACCATCTGGGTTTTGCCGAAGAGTGTCTTTCAGGTGGAAGATTAGAGGCTGTCATTTTCACCGAGGTTGATATTGCCGGAGGAAAATCTCGAACGGCTTCAGCTTCTTTACTGAAAGAGCATTGGATCCAGGCTTCAAAACATTTAGGCTTTACTACATTACCCTATGATGGAATAATCACAAAGAAGAGTTCATCAAATTTCGCCAAAACCAAATCAAAACAGGAAATCATGTTGGCTACAGAGACCCCATCCATAAGTTCCTTGAAGATGGCAAGGGAGATTCTAAGAGAGCTAGGCGGGGATCGGCCGGGAATTGTGGTGGTGACAGGATCGCTGCATGTCGTGTCCTCAGTGCTGGCCTCTCTCCCTAGCTGCTAA 1731 43.85 MGTFQFLRQYLSLSYRRPLISTIDGVFFFAVCPKQRLSTSSEDPELKDFMDYLDLLKNYEKLGVPKGAGTDSEDGFDLGRMKRLLERLGNPLSKLFTLRGRRVKDQLLHFWPTSYEQKDIMLVLIPGIMIFIFLSILSDHSLYFSMPSPHIQTIRERISIGRSGELVSAKTLNCIFNKNKMILDRSMELENGRLSHFEFIQVLTAMAFALFAQENVDIAVVEAGLGGARDATNVICSSGLALSIITSISEEHLAALGGSLESIAAAKAGIIKHQCPVVLGGPLLPHIERIFRNKASSMCSPVVSASDAGRKCTVKSISVSDGRLCQTCDIVIQTENSFELFFELSDVKLLMIGSHQLHNAVTATCAALCLQKLGWKLSDGSIHTGLEETFLIGRGQILSSKEVAALGLSGVRILLDGAHTKESAIALMKTINMAFPYEHLVLVVAMASDKDHLGFAEECLSGGRLEAVIFTEVDIAGGKSRTASASLLKEHWIQASKHLGFTTLPYDGIITKKSSSNFAKTKSKQEIMLATETPSISSLKMAREILRELGGDRPGIVVVTGSLHVVSSVLASLPSC 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8986953 8990637 + Bpe005627.3 Bpe12g00371 112384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00371 576 Gene3D - 393 574 IPR036615 GO:0009058|GO:0016881
Bpe12g00371 576 PANTHER FOLYLPOLYGLUTAMATE SYNTHASE-RELATED 148 572 IPR001645 GO:0004326|GO:0005524|GO:0009396
Bpe12g00371 576 PANTHER DIHYDROFOLATE SYNTHETASE-RELATED 41 95 - -
Bpe12g00371 576 Pfam Mur ligase middle domain 207 367 IPR013221 GO:0005524|GO:0009058|GO:0016881
Bpe12g00371 576 PANTHER FOLYLPOLYGLUTAMATE SYNTHASE-RELATED 41 95 IPR001645 GO:0004326|GO:0005524|GO:0009396
Bpe12g00371 576 ProSitePatterns Folylpolyglutamate synthase signature 2. 220 235 IPR018109 GO:0004326|GO:0005524|GO:0009396
Bpe12g00371 576 SUPERFAMILY MurD-like peptide ligases, catalytic domain 148 390 IPR036565 GO:0005524|GO:0009058
Bpe12g00371 576 PANTHER DIHYDROFOLATE SYNTHETASE-RELATED 148 572 - -
Bpe12g00371 576 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 393 573 IPR036615 GO:0009058|GO:0016881
Bpe12g00371 576 Gene3D - 66 391 IPR036565 GO:0005524|GO:0009058
Bpe12g00371 576 TIGRFAM folC: bifunctional protein FolC 148 571 IPR001645 GO:0004326|GO:0005524|GO:0009396
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00371 K20457 DHFS; dihydrofolate synthase [EC:6.3.2.12] - qsu:112020235 598.971
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00371 Bpe-Chr12:8986953 Bpe15g01269 Bpe-Chr15:21120151 1.57E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g805 . . . . . . . . Cmo16g00092 Cmo18g01314 . . . . Sed02g1696 . Cpe14g00072 Bhi01g01424 Tan01g0175 Cmetu06g0839 . Hepe07g0108 Mch10g0110 . Cla01g00212 Cam01g0217 Cec01g0211 Cco01g0215 Clacu01g0212 Cmu01g0206 Cre09g2301 Cone1ag1201 . . . Lsi05g01177 Csa05g00229 Chy09g01271 . . . . . . Bpe12g00371 . . . . . Cma16g00088 Cma18g01285 Car16g00078 Car18g01204 Cpe09g00055 . . . . . . . . Cla05g00931 Cam05g1018 Cec05g1022 Cco05g1018 Clacu05g1007 Cmu05g0960 Cre05g1041 . Csa03g02171 Chy06g01283 Cme09g01814
Vvi16g865 Blo06g01075 . . . . . . . Cmo16g00075 . . . . . Sed02g0861 . Cpe14g00058 Bhi01g01449 Tan01g0150 Cmetu09g1713 . . Mch10g0089 . . . . . . . . . . . . . . . . . . . Bda15g00774 . Bpe12g00371 . . . . . Cma16g00073 . Car16g00064 . . . . . . . . . . Cla05g00947 Cam05g1037 Cec05g1042 Cco05g1036 Clacu05g1028 Cmu05g0978 Cre05g1057 . Csa03g02195 Chy06g01258 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010225 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00371 Bpe_Chr12 FPKM 5.254902 5.336825 7.960955 7.592094 12.067691 12.056442 12.459134 10.247811 8.306183 8.988666