Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00374 ATGAAAACTTCAGTTACAGGGACATGGAAGCGCAATCGGTGGAAACACAACTTTAGAATAATTCCCTCCGTTCTCTCCCAGTATTCCAAGGCTGCGGATTCAAACATTGTTTCCACCAATATTTGCATCTCCAAGCTTGGGAAGGATGGACAACTCGATCTTGCTCGGCACTTGTTCGACAAAATGCCTCTTAGAACTGTTGTCTCGTGGAATTCAATGATTTCTGGGTATTCCAAACGGGGAAAATATAAAGAAGCTCTCACTCTTCTTTCTACGATGCATCAAACCAATGTAAAACCCAATGAGACCACTTTCTCTACTGCATTCAGTGTTTGCTCCCATTCAAAGTCGTTAGGTGAGGGAAAACAACTTCACTGTTTAGTTTTGAAATCTGGTTCGGCTAAATTTGACCTCGTGGGTTGTTCATTACTGTATCTATATTCTAGTTCTTTTAAAATTAAAAGCGCTGAGCGGGTGTTTGAAGAGTTGTATGAGGAAAATGTGTTGCTTTGGAGTTTGATGCTTGTGGGGTATGTGCAATGTAATTTGATGGCTGAGGGTTTCCATCTTTTCATGAAAATTCCTAACAGGGATGTCTTCGTATGGACCTCGTTGATTTCTGGATATGCTAGGAGCGACCATGAGAGAGAAAGGGCGTTAGAGTTGTTCTGGTGGATGAGACAGAGTGGTGAGGCTTTACCCAATGAGTTTACCTTTGATTGTGTTTTGAGGGTGTGTGGGAAACTTGGAATTTCAAATGAAGGAAAGCTTGTTCATGGGCTTCTGATTAAATTCGGGTTCGAGTTTGATAAATCAATTGGAGGCTCTTTAATTGAATTTTATTCTGAATGTGAAGCTATTGATGATGCTCAGAAAGTATGTAAGGGTATGGGAAAGTGCTTATGTTTGAATGCTTTAAATTCTCTTCTCAAGGGGCTCATACTAGTGGGTAGGATTGGTGATGCAAAAGATGTTTTTGAAAGATCAAATGAAAAAGATTCACGTTCTTATAATATTATGATTAAAGGGTACGCAACGAGTGGTCAGGTTGAAGAATCAATTAGATTGTTTGAAAGAATGACGAATAAAACTATCATTTCCTTTAATACTATGATCTCTGTGTATTCCAGGAATTGTGAACTTGATAAAGCCGTGAAACTTTTCAAAGAAACTAAAGGAGAAGGAAATACCATAACATGGAATTCAATGATGTCCGGCTATGTTCAGAGCAATGAACATGAAGAAGCATTCAAACTATATGTCACGATGTGTAGATTGAAAATAAGCAGTTCCAGATCGACATTTTCTGCTCTACTTCATGCTTGTACATGTCTAGGGTCACTTCAACTTGGTCAATTACTTCATGGCCGAGTCGTGAAAACTCCATTTGAATCCAATGTTCATGTTGGAACTTCTCTGATTGATATGTACTCAAAATGTGGAAGCATATCTGATGCTCAAAAATGTTTCGCTAGTGTCTGTTATCCAAATGTCGCAGCTTGTACGGCTCTTATTAATGCGTATGTACATCATGGGCTTGGTACCAAGGCATTTTCACTCTTTGAAAATATGATTTCACAAGGAATAGTTCCAAATGCAGCAACTATTTTAGGAATTCTTTCTGCTTGTGGCCGTGCTGGTTTAATAAATGAAGGGTTGAAAATTTTTAACGCAATGGAGGCTAATTATGGTGTAGTTCCAACATATGAACACTATGCCTGTGTAGTTAATCTTCTTGGTAGATCAGGCTATTTGCGAGAAGCTGAAGATTTTATAAAAAATATGCCAATTGAAGCAGATTGTGTGATCTGGGGAGCTTTGCTCAATGCTTGTTGGTTTTGGATGGACATGGAATTGGGAGAGAGGGTGGCTGCAAAGATGTTAGCCATAAATCCCATTCCAATATCAGCTTATGTCATCATGTCCAACATGTATGCTGTCTTAGGAAAATGGGTGGAGAAGATTAATTTAAGGAATACTTTGAAAAGCTTGGAATTGAAAAAGAGTCGAGGTTGTAGTTGGCTTGAACTGAATAGTGGAATTTATGTATTCTATGTCGAAGATAGAGGCCATCCTTGTTACAATCTGATATATGAAACTCTGGATCATCTAACCACGAATAGCAATTATATCACTCGATGTGAATTTTTTTCCTGA 2157 38.43 MKTSVTGTWKRNRWKHNFRIIPSVLSQYSKAADSNIVSTNICISKLGKDGQLDLARHLFDKMPLRTVVSWNSMISGYSKRGKYKEALTLLSTMHQTNVKPNETTFSTAFSVCSHSKSLGEGKQLHCLVLKSGSAKFDLVGCSLLYLYSSSFKIKSAERVFEELYEENVLLWSLMLVGYVQCNLMAEGFHLFMKIPNRDVFVWTSLISGYARSDHERERALELFWWMRQSGEALPNEFTFDCVLRVCGKLGISNEGKLVHGLLIKFGFEFDKSIGGSLIEFYSECEAIDDAQKVCKGMGKCLCLNALNSLLKGLILVGRIGDAKDVFERSNEKDSRSYNIMIKGYATSGQVEESIRLFERMTNKTIISFNTMISVYSRNCELDKAVKLFKETKGEGNTITWNSMMSGYVQSNEHEEAFKLYVTMCRLKISSSRSTFSALLHACTCLGSLQLGQLLHGRVVKTPFESNVHVGTSLIDMYSKCGSISDAQKCFASVCYPNVAACTALINAYVHHGLGTKAFSLFENMISQGIVPNAATILGILSACGRAGLINEGLKIFNAMEANYGVVPTYEHYACVVNLLGRSGYLREAEDFIKNMPIEADCVIWGALLNACWFWMDMELGERVAAKMLAINPIPISAYVIMSNMYAVLGKWVEKINLRNTLKSLELKKSRGCSWLELNSGIYVFYVEDRGHPCYNLIYETLDHLTTNSNYITRCEFFS 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9007880 9010036 - Bpe005629.2 Bpe12g00374 112387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00374 718 Pfam PPR repeat 201 214 IPR002885 -
Bpe12g00374 718 Pfam PPR repeat 336 363 IPR002885 -
Bpe12g00374 718 Pfam PPR repeat 471 490 IPR002885 -
Bpe12g00374 718 Pfam PPR repeat 366 395 IPR002885 -
Bpe12g00374 718 Pfam PPR repeat 37 63 IPR002885 -
Bpe12g00374 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
Bpe12g00374 718 Gene3D Tetratricopeptide repeat domain 450 538 IPR011990 GO:0005515
Bpe12g00374 718 Gene3D Tetratricopeptide repeat domain 276 363 IPR011990 GO:0005515
Bpe12g00374 718 Gene3D Tetratricopeptide repeat domain 364 449 IPR011990 GO:0005515
Bpe12g00374 718 Gene3D Tetratricopeptide repeat domain 10 126 IPR011990 GO:0005515
Bpe12g00374 718 Gene3D Tetratricopeptide repeat domain 539 663 IPR011990 GO:0005515
Bpe12g00374 718 Gene3D Tetratricopeptide repeat domain 127 254 IPR011990 GO:0005515
Bpe12g00374 718 PANTHER - 472 706 - -
Bpe12g00374 718 PANTHER - 181 299 - -
Bpe12g00374 718 TIGRFAM PPR: pentatricopeptide repeat domain 336 361 IPR002885 -
Bpe12g00374 718 TIGRFAM PPR: pentatricopeptide repeat domain 366 392 IPR002885 -
Bpe12g00374 718 TIGRFAM PPR: pentatricopeptide repeat domain 539 568 IPR002885 -
Bpe12g00374 718 TIGRFAM PPR: pentatricopeptide repeat domain 500 533 IPR002885 -
Bpe12g00374 718 TIGRFAM PPR: pentatricopeptide repeat domain 68 102 IPR002885 -
Bpe12g00374 718 TIGRFAM PPR: pentatricopeptide repeat domain 398 429 IPR002885 -
Bpe12g00374 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 66 100 IPR002885 -
Bpe12g00374 718 PANTHER - 368 508 - -
Bpe12g00374 718 PANTHER BNACNNG15330D PROTEIN 31 199 - -
Bpe12g00374 718 Pfam PPR repeat family 66 112 IPR002885 -
Bpe12g00374 718 Pfam PPR repeat family 396 442 IPR002885 -
Bpe12g00374 718 Pfam PPR repeat family 496 543 IPR002885 -
Bpe12g00374 718 PANTHER BNACNNG15330D PROTEIN 472 706 - -
Bpe12g00374 718 PANTHER BNACNNG15330D PROTEIN 181 299 - -
Bpe12g00374 718 PANTHER BNACNNG15330D PROTEIN 368 508 - -
Bpe12g00374 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 233 IPR002885 -
Bpe12g00374 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Bpe12g00374 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Bpe12g00374 718 PANTHER - 31 199 - -
Bpe12g00374 718 PANTHER - 316 365 - -
Bpe12g00374 718 Pfam E motif 616 676 IPR046848 -
Bpe12g00374 718 PANTHER BNACNNG15330D PROTEIN 316 365 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00374 - - - qlo:115983567 913.679
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00374 Bpe-Chr12:9007880 Bpe08g00954 Bpe-Chr8:11932192 2.64E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g871 Blo06g01077 . . . . . . . . . Cma02g01103 . . . . Cpe05g00613 . . . . . . . . Cla01g00059 . . . . . . . . . . . Csa05g00067 Chy09g01423 . . . . Bda15g00777 . Bpe12g00374 . . . Cmo02g01130 . . . . . . . Bhi12g00617 . . . Hepe06g0775 . Lcy12g0117 . . . . . . . Lsi09g00038 . . Cme09g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004896 1 4 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 3 1 1 1 1 1 1 1 1 1 1 3 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00374 Bpe_Chr12 FPKM 0.0 0.0 0.0 11.478978 13.709862 0.0 9.819566 10.0899 0.0 0.0