Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bpe12g00391 | ATGATGATCGGAGATGGAATGAGATATACCATTATTACTGGGAGTAAAAGTGTCGGCGGTGGCTCTACGACTTTCAATTCTGCGACTGTCGCCGTGACAGGAGACGGGTTTATTGCTCGTGGTATCACTTTCCGTAACACAGCTGGAGCGGAAAATCACCAGGCCGTGGCCCTCCGATCAGGTGCTGATCTCTCTGTTTTCTTCCGATGCGGTTTCGAGGGATACCAAGACACCCTCTACGTACACTCCCAGCGACAATTTTATCGAGAATGCTACATCTACGGCACTGTCGATTTCATCTTTGGCAACGCTGCAGTCATTTTCCAAAACTGCATGATCTTACCCAGAAAACCAATACCCGGGCAACAAATCGCGGTCACAGCCCAGGGTCGGACCGACCCCAATCAAAACACGGGAATCTCGATCCAAAACTGTCGTGTTTCGCCAGCGTCAGATCTTGTACCAGTCCAAACCACAGTGAGAACGTACCTCGGAAGGCCATGGAAAGAGTATTCACGTACGGTTTTCATGCAAACGTTTCTCGATAAATTCATAAACCCAGCAGGGTGGCTGGAATGGAGCGGAAATTTCGCGTTGGATACTTTATATTACGGGGAATATAAGAACTTCGGACCTGGTTCGGCGACAAACCAGAGAGTGAAATGGAAGGGTTATCGAGTTATAACGAGTGCGACAGAGGCTTCAAAATTTACAGTACAGAACTTTATTGCCGGTAGTTCGTGGCTGCCCGGCACCGGAGTTCCATTCACTGCCGGACTATGA | 783 | 48.91 | MMIGDGMRYTIITGSKSVGGGSTTFNSATVAVTGDGFIARGITFRNTAGAENHQAVALRSGADLSVFFRCGFEGYQDTLYVHSQRQFYRECYIYGTVDFIFGNAAVIFQNCMILPRKPIPGQQIAVTAQGRTDPNQNTGISIQNCRVSPASDLVPVQTTVRTYLGRPWKEYSRTVFMQTFLDKFINPAGWLEWSGNFALDTLYYGEYKNFGPGSATNQRVKWKGYRVITSATEASKFTVQNFIAGSSWLPGTGVPFTAGL | 260 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 9331378 | 9332494 | - | Bpe005647.1 | Bpe12g00391 | 112404 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bpe12g00391 | 260 | ProSitePatterns | Pectinesterase signature 2. | 93 | 102 | IPR033131 | - | |
| Bpe12g00391 | 260 | Pfam | Pectinesterase | 1 | 245 | IPR000070 | GO:0030599|GO:0042545 | |
| Bpe12g00391 | 260 | PANTHER | PECTINESTERASE | 1 | 259 | - | - | |
| Bpe12g00391 | 260 | Gene3D | - | 1 | 260 | IPR012334 | - | |
| Bpe12g00391 | 260 | PANTHER | PECTINESTERASE | 1 | 259 | - | - | |
| Bpe12g00391 | 260 | SUPERFAMILY | Pectin lyase-like | 1 | 259 | IPR011050 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bpe03g00235 | Bpe12g00391 | CCT | |
| Bpe03g00345 | Bpe12g00391 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bpe12g00391 | Bpe-Chr12:9331378 | Bpe14g00892 | Bpe-Chr14:6662463 | 2.44E-145 | dispersed | |
| Bpe12g00391 | Bpe-Chr12:9331378 | Bpe03g00188 | Bpe-Chr3:2281330 | 9.70E-117 | wgd | |
| Bpe12g00391 | Bpe-Chr12:9331378 | Bpe03g00235 | Bpe-Chr3:3128996 | 1.91E-116 | wgd | |
| Bpe12g00391 | Bpe-Chr12:9331378 | Bpe03g00345 | Bpe-Chr3:6173372 | 7.44E-117 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bpe12g00391 | K01051 | - | csv:101216005 | 447.203 |