Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00400 ATGGAGGAGAAGGAGCATTTCAGTACTGGTTTTGCACTTAAGGGTGATGACGCGCCAGATAGTTACCGGGTTGCTCCGAGATCCGACAACCCGAACCCGGTTGTTGCCCCTGCTACTGTTGCTTCTAATGAGCCAACTGTAGCTGCTGGGTCGTCGGGTACGGCGGTGCCGGCGAGCGAAGGGAAGAAGAAGAGGGGACGACCGAGAAAGTACGGTCCAGACGGGAAGGCCATACTGCCGTTATCACCGATGCCGATTTCTGCATCGATTCCGCTCTCAGGAGAATACTCTGCTTGGAAGCGAGGTAGAGGAAAGCCATCGGAGTCGGCCAAGAAGTCGAGCAAGTTTGTTTTCGGAACTCCTGGAGAGAAAATTGCGTACTCTGTTGGCACGAATTTCACACCTCATGTGATCAATGTTAAGCCTGGTGAGGATGTTACGATGAAGATTATGTGCTTCTCTCAAGAAGGATCTCGAGCTATTTGTATACTCTCTGCAAATGGTACAATTTCAAGTGTCACTCTCCGGCAGCCAACTACATCTGGGGGTACTTTAACTTATGAGGGTCTTTTTGAGATACTTTCGCTATCTGGATCATTTATTCTTACTGAGAATGGAGGACCAAAAAGCAGATCCGGAGGAATGAGTGTCTCATTGGCAGGCCCAGATGGTCGAGTGGTAGGCGGAGGGCTTGCCGGTCTATTGGTCGCTGCTAGTCCTGTCCAGATTGTGGTAGGAAGTTTCCTATCAGGTCACCAGCAAGAAAGCAAGGTGAAACAGCAACAAATTGACTTTACTTCAAAAGTTATCTCTCCCCAAATAAATTCTATCAATGGTGACGAACTCAAAGGGATCTATAGTGGAGTAAAGCCTATTGTCACTCCAGCTTCTTCCTTCCCTGAAGACAACTCAGTCTCTCTAAACCTGGATTCAGCATTTAAAATCTCATCGAGTGACAATAAATCAACTTTGTCCGAAGGTGAGCCGAAGGGCCCCGTGCAATCGAACGGCAAAGTTTCTTGCTGA 1026 48.25 MEEKEHFSTGFALKGDDAPDSYRVAPRSDNPNPVVAPATVASNEPTVAAGSSGTAVPASEGKKKRGRPRKYGPDGKAILPLSPMPISASIPLSGEYSAWKRGRGKPSESAKKSSKFVFGTPGEKIAYSVGTNFTPHVINVKPGEDVTMKIMCFSQEGSRAICILSANGTISSVTLRQPTTSGGTLTYEGLFEILSLSGSFILTENGGPKSRSGGMSVSLAGPDGRVVGGGLAGLLVAASPVQIVVGSFLSGHQQESKVKQQQIDFTSKVISPQINSINGDELKGIYSGVKPIVTPASSFPEDNSVSLNLDSAFKISSSDNKSTLSEGEPKGPVQSNGKVSC 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9426340 9430213 - Bpe005656.1 Bpe12g00400 112413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00400 341 MobiDBLite consensus disorder prediction 35 53 - -
Bpe12g00400 341 MobiDBLite consensus disorder prediction 1 78 - -
Bpe12g00400 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 135 248 IPR005175 -
Bpe12g00400 341 Gene3D - 135 268 - -
Bpe12g00400 341 ProSiteProfiles PPC domain profile profile. 130 271 IPR005175 -
Bpe12g00400 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 7 327 IPR039605 GO:0003680
Bpe12g00400 341 MobiDBLite consensus disorder prediction 317 341 - -
Bpe12g00400 341 CDD DUF296 134 248 IPR005175 -
Bpe12g00400 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 7 327 - -
Bpe12g00400 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 132 254 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe07g00968 Bpe12g00400 CCT
Bpe07g00968 Bpe12g00400 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00648 Bpe-Chr9:15110086 Bpe12g00400 Bpe-Chr12:9426340 2.40E-47 dispersed
Bpe11g00702 Bpe-Chr11:5414807 Bpe12g00400 Bpe-Chr12:9426340 4.85E-98 dispersed
Bpe12g00400 Bpe-Chr12:9426340 Bpe13g00952 Bpe-Chr13:15419854 4.88E-63 dispersed
Bpe12g00400 Bpe-Chr12:9426340 Bpe07g00968 Bpe-Chr7:15472111 5.99E-175 wgd
Bpe12g00400 Bpe-Chr12:9426340 Bpe07g00145 Bpe-Chr7:1020199 5.96E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00400 - - qsu:112026407 390.193